Stem-loop ssc-mir-676-1

Accession

MI0013152

Description

Sus scrofa ssc-mir-676-1 precursor miRNA

Literature search

3 open access papers mention ssc-mir-676-1
(3 sentences)

Sequence

63 reads, 17 reads per million, 10 experiments

aacgcgugaCUCUUCAAUCUCAGGACUCGCAuaauuagcagaaugCCGUCCUAAGGUUGUUGAGUUcugcguuucugggc
((((((.(((((..((((((.(((((..((((..........)))).))))).))))))..))))).)))))).......

Structure

-------      u     UU      C     UC    aauu 
       aacgcg gaCUC  CAAUCU AGGAC  GCAu    a
       |||||| |||||  |||||| |||||  ||||     
       uugcgu UUGAG  GUUGGA UCCUG  Cgua    g
cgggucu      c     UU      A     -C    agac 

Annotation confidence Not enough data

Genome context

chrX: 63280928-63281007 [+]

Mature ssc-miR-676-5p

• Accession: MIMAT0017382
• Description: Sus scrofa ssc-miR-676-5p mature miRNA
• Sequence: 10 - CUCUUCAAUCUCAGGACUCGCA - 31
• Evidence: experimental ; Illumina [2-3]

Mature ssc-miR-676-3p

• Accession: MIMAT0013943
• Description: Sus scrofa ssc-miR-676-3p mature miRNA
• Sequence: 46 - CCGUCCUAAGGUUGUUGAGUU - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20433717
   Deciphering the porcine intestinal microRNA transcriptome
   Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
   BMC Genomics (2010) 11:275


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100