miRBase entry: aae-mir-317-1

Stem-loop aae-mir-317-1


Accession
MI0013442
Description
Aedes aegypti aae-mir-317-1 precursor miRNA
Gene family
MIPF0000144; mir-317

Literature search
2 open access papers mention aae-mir-317-1
(6 sentences)

Sequence

362199 reads, 18155 reads per million, 2 experiments
gaggaauuucggcuaccgggauacacccugugcucgcuuugcauucgaaacuagUGAACACAGCUGGUGGUAUCUcaguggcccuaauccga
..(((.((..((((((.(((((((((((((((.(((((..............))))).)))))..))).))))))).))))))..)))))..

Structure
ga   a  uc      c       -   --     c     uugcau 
  gga uu  ggcuac gggauac acc  cugug ucgcu      u
  ||| ||  |||||| ||||||| |||  ||||| |||||       
  ccu aa  ccggug cUCUAUG UGG  GACAC AGUga      c
ag   -  uc      a       G   UC     A     ucaaag 


Annotation confidence Not enough data
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Genome context
supercont1.153: 2154700-2154791 [-]

Database links

Mature aae-miR-317

Accession MIMAT0014224
Description Aedes aegypti aae-miR-317 mature miRNA
Sequence 55 - UGAACACAGCUGGUGGUAUCU - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119