miRBase entry: aly-MIR169h

Stem-loop aly-MIR169h


Accession
MI0014552
Description
Arabidopsis lyrata aly-MIR169h precursor miRNA
Gene family
MIPF0000012; MIR169_1


Sequence

4 reads, 139 reads per million, 1 experiments
uagaaaaucauauaagagaaaauggugacaugaagaaugagaacuuguguggUAGCCAAGGAUGACUUGCCUGcguuuuaacaauacaauaucaaagacuacucgaucgaucgauagucuuagaguugguuagucgucaGGCAGUCUCCUUGGCUAUUcaaacaauucuuguucuccucauuucacaucucucuuucguuuuuug
((((((((.....((((((.....((((.((((((((((((((.((((.(((((((((((((.((((.(((((((..(((((....((((.((.(((((((.((((....))))))))))).))))))))))).)).))))))))))))))))))).))).))))))))))))))..)))).))))...))))))..))))))))

Structure
        cauau      aaaug    c    --          c    g   -          U    U     -  uu     aaua    a  a       c    u 
uagaaaau     aagaga     guga auga  agaaugagaa uugu ugg UAGCCAAGGA GACU GCCUG cg  uuaac    caau uc aagacua ucga c
||||||||     ||||||     |||| ||||  |||||||||| |||| ||| |||||||||| |||| ||||| ||  |||||    |||| || ||||||| ||||  
guuuuuug     uucucu     cacu uacu  ucuuguucuu aaca acU AUCGGUUCCU CUGA CGGac gc  gauug    guug ag uucugau agcu g
        ---cu      --cua    u    cc          -    a   U          -    -     u  -u     ----    -  a       -    a 


Annotation confidence Not enough data
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Genome context
GL348713.1: 8198473-8198677 [-]

Database links

Mature aly-miR169h-5p

Accession MIMAT0017499
Description Arabidopsis lyrata aly-miR169h-5p mature miRNA
Sequence 53 - UAGCCAAGGAUGACUUGCCUG - 73
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR169h-3p

Accession MIMAT0017500
Description Arabidopsis lyrata aly-miR169h-3p mature miRNA
Sequence 140 - GGCAGUCUCCUUGGCUAUU - 158
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103