Stem-loop aly-MIR831

Accession

MI0014608

Description

Arabidopsis lyrata aly-MIR831 precursor miRNA

Sequence

aagugcuacaagaauguauagucuuagagucucaAGAAGAGGUACAAGGAGAUGAGAagugaaucacugaaacaagugguucugguuuguggaucaguaugguuuacccaaaacacguguuuggugcuucacuucUAAACUCCUCGUACUCUUCUUGggauucuaugacuuacacuuguugauuu
.....(.(((((..((((.((((.(((((((((((((((((.(((.(((((...(((((((((.((((.(((((.(((....(((...((((((((...)))))))))))...))).))))))))).)))))))))...))))).)))))))))))))))))))).))))))))))))).)....

Structure

aagug u     aa    u    u                 G   A     AUG         u    g     a   guuc   uuu        g 
     c acaag  ugua aguc uagagucucaAGAAGAG UAC AGGAG   AGAagugaa cacu aaaca gug    ugg   guggauca  
     | |||||  |||| |||| ||||||||||||||||| ||| |||||   ||||||||| |||| ||||| |||    |||   |||||||| u
     g uguuc  acau ucag aucuuaggGUUCUUCUC AUG UCCUC   Ucuucacuu gugg uuugu cac    acc   cauuuggu  
-uuua u     --    -    u                 -   C     AAA         c    -     g   -aaa   ---        a 

Annotation confidence Low

Genome context

GL348716.1: 2376177-2376361 [+]

Mature aly-miR831-5p

• Accession: MIMAT0017613
• Description: Arabidopsis lyrata aly-miR831-5p mature miRNA
• Sequence: 35 - AGAAGAGGUACAAGGAGAUGAGA - 57
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR831-3p

• Accession: MIMAT0017614
• Description: Arabidopsis lyrata aly-miR831-3p mature miRNA
• Sequence: 136 - UAAACUCCUCGUACUCUUCUUG - 157
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103