Stem-loop aly-MIR834

Accession

MI0014610

Description

Arabidopsis lyrata aly-MIR834 precursor miRNA

Gene family

MIPF0001183; MIR834

Sequence

uuacagcgacagccaaaaucACCACAGCUUCUGCUACGAACguguuaagccauccuuuugaccauugcugcaccacuauuacggccaucacaagaaaaucuaugcaaguggaaacagugauaguagcggcuggcuaaugacacguUGGUAGCAGUAGCGGUGGUAAugucgauagcguga
......(((((.........(((((.(((.(((((((.((((((((((((((..............(((((...((((((((..((((..(((((...))).))...)))).....)))))))).))))))))))..))))))))).))))))).))).)))))..))))).........

Structure

---uuacag     gccaaaauc     A   U       G         --     uccuuuugaccauu     acc        ---gg    -ca  -   a 
         cgaca         ACCAC GCU CUGCUAC AACguguua  agcca              gcugc   acuauuac     ccau   ca aga  
         |||||         ||||| ||| ||||||| |||||||||  |||||              |||||   ||||||||     ||||   || ||| a
         gcugu         UGGUG CGA GACGAUG Uugcacagu  ucggu              cggcg   ugauagug     ggug   gu ucu  
agugcgaua     -------AA     G   U       G         aa     --------------     --a        acaaa    aac  a   a 

Annotation confidence Not enough data

Genome context

GL348718.1: 3227917-3228096 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aly-MIR834

Mature aly-miR834-5p

• Accession: MIMAT0017617
• Description: Arabidopsis lyrata aly-miR834-5p mature miRNA
• Sequence: 21 - ACCACAGCUUCUGCUACGAAC - 41
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR834-3p

• Accession: MIMAT0017618
• Description: Arabidopsis lyrata aly-miR834-3p mature miRNA
• Sequence: 146 - UGGUAGCAGUAGCGGUGGUAA - 166
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103