Stem-loop aly-MIR868

Accession

MI0014629

Description

Arabidopsis lyrata aly-MIR868 precursor miRNA

Gene family

MIPF0001173; MIR868

Sequence

gaaucuguugaaguacCUUUCUCGGCACUUGAGGAUGUcaacugaccagcucucguauuucaugucauaauaauagucacacuagggugauauaacgaggagagaguuauaucauccuagcgcgauuguuuuuaugacaugaaauacguuuuagaacuuaaaacacuuugacCUUCUUAAGUGCUGAUAAUGUuucuuaauuauguuu
......(((((...((..((.((((((((((((((.(((((.((...((.((((((((((((((((((((.(((((((.(.(((((((((((((((.........))))))))))))))).).))))))).)))))))))))))))))....))).)).....))..))))).)))))))))))))).)).))...))))).......

Structure

-gaaucu     agu  CU  C              U     -c  --acc  c   ----                 u       a a               gag 
       guuga   ac  UU UCGGCACUUGAGGA GUcaa  ug     ag ucu    cguauuucaugucauaa aauaguc c cuagggugauauaac   g
       |||||   ||  || |||||||||||||| |||||  ||     || |||    ||||||||||||||||| ||||||| | |||||||||||||||   a
       uaauu   UG  AA AGUCGUGAAUUCUU caguu  ac     uc aga    gcauaaaguacaguauu uuguuag g gauccuacuauauug   g
uuuguau     cuu  -U  U              C     uc  aaaau  a   uuuu                 u       c c               aga 

Annotation confidence Not enough data

Genome context

GL348715.1: 8091568-8091775 [+]

Mature aly-miR868-5p

• Accession: MIMAT0017655
• Description: Arabidopsis lyrata aly-miR868-5p mature miRNA
• Sequence: 17 - CUUUCUCGGCACUUGAGGAUGU - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR868-3p

• Accession: MIMAT0017656
• Description: Arabidopsis lyrata aly-miR868-3p mature miRNA
• Sequence: 173 - CUUCUUAAGUGCUGAUAAUGU - 193
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103