Stem-loop aly-MIR399g

Accession

MI0014636

Description

Arabidopsis lyrata aly-MIR399g precursor miRNA

Gene family

MIPF0000015; MIR399

Sequence

gaugaugcaugguuggauuacaGGGCAAAUACUCCAUUGGCAGAuaguuuucgcuacaucuauauuauuuguuauuauaugggugaaucaauguaugaaaaauacuuuacUGCCAAAGGAGAUUUGCCCCGcaauuuguuccaugcaaaagaacauc
.....(((((((.((((((.(.((((((((.((((.(((((((.((((....))))(((((((((.((.....)).))))))))).......((((.....))))....))))))).)))))))))))).).))))))..)))))))..........

Structure

-----gauga       -u      a a        A    A       -----------Auaguuuucgcua         u  u 
          ugcaugg  uggauu c GGGCAAAU CUCC UUGGCAG                        caucuauau au u
          |||||||  |||||| | |||||||| |||| |||||||                        ||||||||| || g
          acguacc  guuuaa G CCCGUUUA GAGG AACCGUc                        guggguaua ua u
cuacaagaaa       uu      c C        -    A       auuucauaaaaaguauguaacuaa         u  u 

Annotation confidence Not enough data

Genome context

GL348713.1: 12882529-12882685 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from aly-MIR399g

Mature aly-miR399g-5p

• Accession: MIMAT0017669
• Description: Arabidopsis lyrata aly-miR399g-5p mature miRNA
• Sequence: 23 - GGGCAAAUACUCCAUUGGCAGA - 44
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR399g-3p

• Accession: MIMAT0017670
• Description: Arabidopsis lyrata aly-miR399g-3p mature miRNA
• Sequence: 111 - UGCCAAAGGAGAUUUGCCCCG - 131
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103