Stem-loop aly-MIR3445

Accession

MI0014661

Description

Arabidopsis lyrata aly-MIR3445 precursor miRNA

Sequence

266 reads, 9275 reads per million, 1 experiments

auggugguaaaauuugauaauugucaccgacgggugGGUCUUUCUCCCUAUCAAGCGAACCAUCACCUUCCAAACCguucccuucuucuucgugugggagaguaguccuaaguagccaaaagaagaagaagggcacaacuccaagggUUUGGAAGGUGAUUGUUUGCUUGAUAGUGAGAAAGACCCAcccauuggugauaaugagaaagacgcagacau
...(((......(((....(((((((((((.(((((((((((((((.(((((((((((((.(((((((((((((((.((((((((((((((...(((((......)))))...........)))))))))))).........)).))))))))))))))).))))))))))))).))))))))))))))).)))))))))))...)))..)))......

Structure

---aug   guaaaa   gaua           c               C             C               g  ---------            --------gug     ga 
      gug      uuu    auugucaccga gggugGGUCUUUCUC CUAUCAAGCGAAC AUCACCUUCCAAACC uu         cccuucuucuuc           uggga  g
      |||      |||    ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| ||         ||||||||||||           |||||   
      cgc      aaa    uaauagugguu cccACCCAGAAAGAG GAUAGUUCGUUUG UAGUGGAAGGUUUgg aa         gggaagaagaag           auccu  u
uacaga   ----ag   -gag           a               U             U               g  ccucaacac            aaaaccgauga     ga 

Annotation confidence Low

Genome context

GL348713.1: 7706713-7706931 [-]

Mature aly-miR3445-5p.2

• Accession: MIMAT0017723
• Description: Arabidopsis lyrata aly-miR3445-5p.2 mature miRNA
• Sequence: 37 - GGUCUUUCUCCCUAUCAAGCG - 57
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3445-5p.1

• Accession: MIMAT0017724
• Description: Arabidopsis lyrata aly-miR3445-5p.1 mature miRNA
• Sequence: 56 - CGAACCAUCACCUUCCAAACC - 76
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3445-3p.1

• Accession: MIMAT0017725
• Description: Arabidopsis lyrata aly-miR3445-3p.1 mature miRNA
• Sequence: 148 - UUUGGAAGGUGAUUGUUUGCU - 168
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR3445-3p.2

• Accession: MIMAT0017726
• Description: Arabidopsis lyrata aly-miR3445-3p.2 mature miRNA
• Sequence: 167 - CUUGAUAGUGAGAAAGACCCA - 187
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103