Stem-loop aly-MIR403b

Accession

MI0026014

Description

Arabidopsis lyrata aly-MIR403b precursor miRNA

Sequence

51 reads, 1778 reads per million, 1 experiments

gaagagucguauuacaUGUUUUGUGCGUGACUCUAAUUuaacaggcuuauguuugagauuuuuuugacaaauccggauuuugcuguuggaUUAGAUUCACGCACAAACUCGuaaucugucuuuuc
((((((.((.(((((..((((.((((((((.(((((((((((((.(....(((((.(((((.......))))))))))...)))))))))))))).))))))))))))..))))).)).))))))

Structure

      u  u     aU    U        C             g uuau     a     uu 
gaagag cg auuac  GUUU GUGCGUGA UCUAAUUuaacag c    guuug gauuu  u
|||||| || |||||  |||| |||||||| ||||||||||||| |    ||||| |||||  u
cuuuuc gu uaauG  CAAA CACGCACU AGAUUagguuguc g    uaggc cuaaa  g
      u  c     CU    -        U             - -uuu     -     ca 

Annotation confidence Low

Genome context

GL348933.1: 4999-5123 [+]

Mature aly-miR403b-5p

• Accession: MIMAT0031386
• Description: Arabidopsis lyrata aly-miR403b-5p mature miRNA
• Sequence: 17 - UGUUUUGUGCGUGACUCUAAUU - 38
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR403b-3p

• Accession: MIMAT0031387
• Description: Arabidopsis lyrata aly-miR403b-3p mature miRNA
• Sequence: 91 - UUAGAUUCACGCACAAACUCG - 111
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103