Stem-loop sequence aly-MIR403b

AccessionMI0026014 (change log)
DescriptionArabidopsis lyrata miR403b stem-loop
Gene family MIPF0000290; MIR403
Stem-loop
         u  u     au    u        c             g uuau     a     uu 
5' gaagag cg auuac  guuu gugcguga ucuaauuuaacag c    guuug gauuu  u
   |||||| || |||||  |||| |||||||| ||||||||||||| |    ||||| |||||  u
3' cuuuuc gu uaaug  caaa cacgcacu agauuagguuguc g    uaggc cuaaa  g
         u  c     cu    -        u             - -uuu     -     ca 
Get sequence
Deep sequencing
65 reads, 1.8e+03 reads per million, 1 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (v1.0; GCA_000004255.1) Overlapping transcripts
GL348933.1: 4999-5123 [+]
intergenic
Database links

Mature sequence aly-miR403b-5p

Accession MIMAT0031386
Sequence

17 - 

uguuuugugcgugacucuaauu

 - 38

Get sequence
Deep sequencing41 reads, 1 experiments
Evidence experimental; Illumina [1], SOLiD [2]
Database links

Mature sequence aly-miR403b-3p

Accession MIMAT0031387
Sequence

91 - 

uuagauucacgcacaaacucg

 - 111

Get sequence
Deep sequencing24 reads, 1 experiments
Evidence experimental; Illumina [1], SOLiD [2]
Database links

References

1
PMID:20407027 "MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana" Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC Plant Cell. 22:1074-1089(2010).
2