Stem-loop sequence aga-mir-998

Accession

MI0033334 (change log)

Description

Anopheles gambiae miR-998 stem-loop

Literature search

1 open access papers mention aga-mir-998
(1 sentences)

Stem-loop

   --      c        gu     guauuuaca     c 
5'   gcugaa ucucgugg  cugca         agcgg c
     |||||| ||||||||  |||||         ||||| a
3'   cgacuu agaguacc  gaugu         uugcu c
   cu      -        ac     -------ac     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2R: 13042402-13042472 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-998

• aga-mir-11: chr2R: 13042022-13042111 [+]
• aga-mir-998: chr2R: 13042402-13042472 [+]

Database links

• miRBase Tracker:MI0033334

Mature sequence aga-miR-998-5p

• Accession: MIMAT0041499
• Sequence: 1 - gcugaacucucgugggucugc - 21
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-998-3p

• Accession: MIMAT0041500
• Sequence: 51 - uagcaccaugagauucagcuc - 71
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).