Accession
MI0000018
Description
Caenorhabditis elegans
cel-mir-47 precursor miRNA mir-46
Gene
family?
family?
RF00249;
mir-46
Literature search
5 open access papers mention cel-mir-47
(16 sentences)
(16 sentences)
Sequence
37468
reads,
643
reads per million, 16 experiments
gagagccgacugaaacugAAGAGAGCAGUCUAUUGACAGUcgguuacucgaaaucuuuacUGUCAUGGAGGCGCUCUCUUCAgaugaugucuggccc
....((((((.....(((((((((((.((((..(((((((.((((......))))...)))))))...))))))))))))))).....))).)))..
....((((((.....(((((((((((.((((..(((((((.((((......))))...)))))))...))))))))))))))).....))).)))..
Structure
gaga - ugaaa A -AU --c ac
gcc gac cugAAGAGAGC GUCU UGACAGU gguu u
||| ||| ||||||||||| |||| ||||||| ||||
cgg cug gACUUCUCUCG CGGA ACUGUca cuaa c
--cc u uagua - GGU uuu ag
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chrX: 13921250-13921346 [+]
Database links
Mature cel-miR-47-5p
| Accession | MIMAT0015097 |
| Description | Caenorhabditis elegans cel-miR-47-5p mature miRNA |
| Sequence | 19 - AAGAGAGCAGUCUAUUGACAGU - 40 |
| Evidence |
experimental
CLIPseq [7] |
| Database links |
|
Mature cel-miR-47-3p
| Accession | MIMAT0000018 |
| Description | Caenorhabditis elegans cel-miR-47-3p mature miRNA |
| Sequence | 61 - UGUCAUGGAGGCGCUCUCUUCA - 82 |
| Evidence |
experimental
cloned [1-3], Northern [1], PCR [4], 454 [5], Illumina [6], CLIPseq [7] |
| Database links |
|
| Predicted targets |
|
References
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