Search results

mir-46 family in Rfam (RF00249)

Summary
miR-46 (MIR:MI0000017) and miR-47 (MIR:MI0000018) are expressed in C. elegans from related hairpin precursor sequences [1]. The predicted hairpin precursor sequences for Drosophila miR-281 (MIR:MI0000366, MIR:MI0000370) [2,3] are also related and so are also present in this family. The hairpin precursors (represented here) are predicted based on base pairing and cross-species conservation -- their extents are not known. In this case the mature sequences are expressed from the 3' arms of the hairpin precursors.
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5'

There are 58 hairpins in the mir-46 family

Name Accession RPM Chromosome Start End Strand Confidence
cel-mir-46 MI0000017 615 chrIII 13660515 13660611 + High
cel-mir-47 MI0000018 643 chrX 13921250 13921346 + High
dme-mir-281-1 MI0000366 2379 chr2R 12170373 12170462 - High
dme-mir-281-2 MI0000370 12674 chr2R 12170153 12170244 - High
cbr-mir-46 MI0000500 - chrIII 5569417 5569510 - -
cbr-mir-47 MI0000501 - chrX 19747134 19747226 + -
dps-mir-281-1 MI0001339 - 3 418424 418511 - -
dps-mir-281-2 MI0001340 - 3 418220 418310 - -
ame-mir-281 MI0001587 - CM000054.5 22275351 22275453 - -
aga-mir-281 MI0001618 - chr2L 17362421 17362522 - -
odi-mir-281 MI0007148 - None None -
bmo-mir-281 MI0008348 6348 NW_004582034.1 1683515 1683591 + High
tca-mir-281 MI0008925 - ChLG7 1524911 1524977 - -
dan-mir-281-2 MI0008965 - scaffold_13266 2568938 2569031 + -
dan-mir-281-1 MI0008987 - scaffold_13266 2568753 2568838 + -
der-mir-281-2 MI0009040 - scaffold_4845 17736415 17736506 + -
der-mir-281-1 MI0009068 - scaffold_4845 17736197 17736286 + -
dgr-mir-281-1 MI0009128 - scaffold_15245 18178200 18178287 + -
dgr-mir-281-2 MI0009177 - scaffold_15245 18178390 18178482 + -
dmo-mir-281-1 MI0009195 - scaffold_6496 6376234 6376321 - -
dmo-mir-281-2 MI0009200 - scaffold_6496 6376069 6376161 - -
dpe-mir-281-1 MI0009281 - scaffold_2 605321 605408 - -
dpe-mir-281-2 MI0009312 - scaffold_2 605117 605207 - -
dse-mir-281-2 MI0009344 - scaffold_1 5602761 5602852 - -
dse-mir-281-1 MI0009365 - scaffold_1 5602980 5603069 - -
dsi-mir-281 MI0009472 - None None -
dvi-mir-281-2 MI0009493 - scaffold_12875 19830112 19830202 + -
dvi-mir-281-1 MI0009514 - scaffold_12875 19829928 19830015 + -
dwi-mir-281-2 MI0009561 - scf2_1100000004954 3242070 3242166 + -
dwi-mir-281-1 MI0009620 - scf2_1100000004954 3241883 3241972 + -
dya-mir-281-2 MI0009634 - chr2R 8893554 8893645 + -
dya-mir-281-1 MI0009666 - chr2R 8893348 8893437 + -
bfl-mir-281 MI0010044 - GG666567.1 904339 904423 + -
lgi-mir-281 MI0010135 - KB203274.1 642909 643009 - -
sko-mir-281 MI0010177 - GL011707.1 217203 217303 + -
lmi-mir-281 MI0010642 - None None -
crm-mir-47 MI0011061 - Crem_Contig31 438956 439060 + -
crm-mir-46 MI0011094 - Crem_Contig12 1283899 1284006 - -
ppc-mir-46 MI0011147 - ABKE03000092.1 4795409 4795519 - -
dpu-mir-281 MI0012236 - GL732533.1 1065344 1065431 - -
bma-mir-281 MI0013349 - Bmal_v3_scaffold18 454490 454580 - -
api-mir-281 MI0013360 - GL349875.1 508928 508989 + -
aae-mir-281 MI0013447 1377 supercont1.957 134442 134538 + High
cqu-mir-281-1 MI0013564 - supercont3.1661 13232 13338 + -
nvi-mir-281 MI0014719 - GL341044.1 692904 693006 - -
ngi-mir-281 MI0016629 - None None -
nlo-mir-281 MI0016656 - None None -
asu-mir-46 MI0018546 - None None -
tur-mir-281 MI0019368 - None None -
hco-mir-46 MI0020003 - None None -
mse-mir-281 MI0020995 - JH668342.1 1204825 1204924 + -
hme-mir-281 MI0021762 - HE671164 1105652 1105781 + -
cqu-mir-281-2 MI0023547 - supercont3.640 99719 99825 + -
cbn-mir-46 MI0024921 - Cbre_Contig13 883775 883840 - -
cbn-mir-47 MI0024922 - Cbre_Contig42 326154 326215 + -
prd-mir-46 MI0025575 - KB455535.1 288919 288977 + -
bbe-mir-281 MI0026230 - None None -
pxy-mir-281 MI0027400 9357 scaffold_377 158087 158162 - -



Comments or questions? Email mirbase@manchester.ac.uk