Accession
MI0000355
Description
Drosophila melanogaster
dme-mir-274 precursor miRNA mir-274
Gene
family?
family?
RF00822;
mir-274
Literature search
5 open access papers mention dme-mir-274
(8 sentences)
(8 sentences)
Sequence
257793
reads,
2369
reads per million, 43 experiments
uccuguguugcaguuucguUUUGUGACCGACACUAACGGGUAauuguuuggccgccaggauuaCUCGUUUUUGCGAUCACAAAUUAugaaauugcagcaa
.....(((((((((((((((((((((.((.((..(((((((((((..((((...)))))))))))))))..)))).)))))))..)))))))))))))).
.....(((((((((((((((((((((.((.((..(((((((((((..((((...)))))))))))))))..)))).)))))))..)))))))))))))).
Structure
uccug -- C A CU gu c
uguugcaguuucgu UUUGUGA CG CA AACGGGUAauu uugg
|||||||||||||| ||||||| || || ||||||||||| |||| c
acgacguuaaaguA AAACACU GC GU UUGCUCauuag gacc
----a UU A - UU -- g
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.
Genome context
chr3L: 11656918-11657017 [+]
Database links
Mature dme-miR-274-5p
| Accession | MIMAT0000332 |
| Description | Drosophila melanogaster dme-miR-274-5p mature miRNA |
| Sequence | 20 - UUUGUGACCGACACUAACGGGUA - 42 |
| Evidence |
experimental
Northern [1], 454 [2-3], Illumina [3] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-274-3p
| Accession | MIMAT0020800 |
| Description | Drosophila melanogaster dme-miR-274-3p mature miRNA |
| Sequence | 64 - CUCGUUUUUGCGAUCACAAAUUA - 86 |
| Evidence | not_experimental |
| Database links |
|
References
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