Stem-loop dme-mir-308

Accession

MI0000419

Description

Drosophila melanogaster dme-mir-308 precursor miRNA mir-308

Gene
family

RF00743; mir-308

Literature search

3 open access papers mention dme-mir-308
(12 sentences)

Sequence

520796 reads, 17479 reads per million, 49 experiments

cuCGCAGUAUAUUUUUGUGUUUUGuuucguuuugcaauccaAAUCACAGGAUUAUACUGUGAG
(((((((((((.(((((((.((((..(.((...)).)..)))).))))))).)))))))))))

Structure

           U       U    uu c  u 
cuCGCAGUAUA UUUUGUG UUUG  u gu  
||||||||||| ||||||| ||||  | || u
GAGUGUCAUAU AGGACAC AAac  a cg  
           U       U    cu a  u 

Annotation confidence High

Genome context

chr2R: 14215802-14215864 [-]

Mature dme-miR-308-3p

• Accession: MIMAT0000399
• Description: Drosophila melanogaster dme-miR-308-3p mature miRNA
• Sequence: 42 - AAUCACAGGAUUAUACUGUGAG - 63
• Evidence: experimental ; cloned [1], 454 [2-3], Illumina [3]

Mature dme-miR-308-5p

• Accession: MIMAT0020833
• Description: Drosophila melanogaster dme-miR-308-5p mature miRNA
• Sequence: 3 - CGCAGUAUAUUUUUGUGUUUUG - 24
• Evidence: not_experimental

References

1. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


2. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


3. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879