Accession
MI0000428
Description
Drosophila melanogaster
dme-mir-316 precursor miRNA mir-316
Gene
family?
family?
RF00814;
mir-316
Literature search
2 open access papers mention dme-mir-316
(3 sentences)
(3 sentences)
Sequence
26984
reads,
446
reads per million, 42 experiments
aaauucuagucgauuUGUCUUUUUCCGCUUACUGGCGuuucaauuccacaacgACAGGAAAGGGAAAAAGGCGUAuuuacuaugaguuu
((((((((((.(((.(((((((((((.(((.(((.((((..........)))).)))..)))))))))))))).))).)))).))))))
((((((((((.(((.(((((((((((.(((.(((.((((..........)))).)))..)))))))))))))).))).)))).))))))
Structure
- c u G -A G ucaa
aaauuc uagu gau UGUCUUUUUCC CUU CUG CGuu u
|||||| |||| ||| ||||||||||| ||| ||| ||||
uuugag auca uuA GCGGAAAAAGG GAA GAC gcaa u
u u U - AG A cacc
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Lai et al. predicted this sequence based on conservation in D. pseudoobscura, but did not verify expression [2]. Aravin et al. describe identification and mapping of the 5' end of the excised sequence by cloning [1].
Genome context
chr3L: 21668714-21668802 [-]
Database links
Mature dme-miR-316-5p
| Accession | MIMAT0000408 |
| Description | Drosophila melanogaster dme-miR-316-5p mature miRNA |
| Sequence | 16 - UGUCUUUUUCCGCUUACUGGCG - 37 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-316-3p
| Accession | MIMAT0020842 |
| Description | Drosophila melanogaster dme-miR-316-3p mature miRNA |
| Sequence | 54 - ACAGGAAAGGGAAAAAGGCGUA - 75 |
| Evidence | not_experimental |
| Database links |
|
References
|
