Stem-loop dre-mir-34a

Accession

MI0001365

Description

Danio rerio dre-mir-34a precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

114 open access papers mention dre-mir-34a
(344 sentences)

Sequence

137746 reads, 190.0 reads per million, 275 experiments

cugcugugagugguucucUGGCAGUGUCUUAGCUGGUUGUUGuguggagugagaacgaagCAAUCAGCAAGUAUACUGCCGCAgaaacucgucaccuu
.....((((..((((((.((((((((((((.((((((((((.(((.........))).))))))))))))).))))))))).)).))))..))))...

Structure

cugcu    gu    -  c         -   A          G   gga 
     guga  gguu cu UGGCAGUGU CUU GCUGGUUGUU ugu   g
     ||||  |||| || ||||||||| ||| |||||||||| |||   u
     cacu  ucaa gA GCCGUCAUA GAA CGACUAACga gca   g
--uuc    gc    a  C         U   -          a   aga 

Annotation confidence High

Genome context

chr23: 22591058-22591155 [+]

Mature dre-miR-34a-5p

• Accession: MIMAT0001269
• Description: Danio rerio dre-miR-34a-5p mature miRNA
• Sequence: 19 - UGGCAGUGUCUUAGCUGGUUGUUG - 42
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-34a-3p

• Accession: MIMAT0052736
• Description: Danio rerio dre-miR-34a-3p mature miRNA
• Sequence: 61 - CAAUCAGCAAGUAUACUGCCGCA - 83
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293