Stem-loop ptc-MIR475a

Accession

MI0002361

Description

Populus trichocarpa ptc-MIR475a precursor miRNA MIR475

Gene
family

RF00721; MIR475

Literature search

2 open access papers mention ptc-MIR475a
(10 sentences)

Sequence

caucuugaucAAUGGCCAUUGUAAGAGUAGAaggauccaugaagcaauaauucucuuugcuaaaaugugugauaaaacauugacuccugguauuucacucUUACAGUGCCCAUUGAUUAAGaug
(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))..)))))))))))))))).)))))))))))))))

Structure

               C            A    gau   u  -----------------------     uaa 
caucuugaucAAUGG CAUUGUAAGAGU GAag   cca ga                       agcaa   u
||||||||||||||| |||||||||||| ||||   ||| ||                       |||||   u
guaGAAUUAGUUACC GUGACAUUcuca cuuu   ggu cu                       ucguu   c
               C            -    -au   c  caguuacaaaauaguguguaaaa     ucu 

Annotation confidence Not enough data

Genome context

CM000353.2: 1876687-1876810 [+]

Mature ptc-miR475a-3p

• Accession: MIMAT0002067
• Description: Populus trichocarpa ptc-miR475a-3p mature miRNA
• Sequence: 101 - UUACAGUGCCCAUUGAUUAAG - 121
• Evidence: experimental ; cloned [1], Northern [1], miRNAseq [2]

Mature ptc-miR475a-5p

• Accession: MIMAT0022915
• Description: Populus trichocarpa ptc-miR475a-5p mature miRNA
• Sequence: 11 - AAUGGCCAUUGUAAGAGUAGA - 31
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034