Stem-loop hsa-mir-550a-3

Accession

MI0003762

Symbol

HGNC: MIR550A3

Description

Homo sapiens hsa-mir-550a-3 precursor miRNA mir-550

Gene
family

RF00873; mir-550

Literature search

18 open access papers mention hsa-mir-550a-3
(116 sentences)

Sequence

6002 reads, 37 reads per million, 123 experiments

gaugcuuugcuggcuggugcAGUGCCUGAGGGAGUAAGAGuccuguuguuguaagauagUGUCUUACUCCCUCAGGCACAUcuccaacaagucuc
...(((.....)))(((.(..((((((((((((((((((...(((((.......)))))..))))))))))))))))))..).))).........

Structure

gaugcuuugcuggc   u cA                  Guc     gu 
              ugg g  GUGCCUGAGGGAGUAAGA   cuguu  u
              ||| |  ||||||||||||||||||   |||||  g
              acc c  CACGGACUCCCUCAUUCU   gauag  u
-----cucugaaca   u UA                  -GU     aa 

Annotation confidence Medium

Genome context

chr7: 29680734-29680828 [-]

Disease association

hsa-mir-550a-3 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-550a-3p

• Accession: MIMAT0003257
• Description: Homo sapiens hsa-miR-550a-3p mature miRNA
• Sequence: 60 - UGUCUUACUCCCUCAGGCACAU - 81
• Evidence: experimental ; RAKE [1], Illumina [2]

Mature hsa-miR-550a-3-5p

• Accession: MIMAT0020925
• Description: Homo sapiens hsa-miR-550a-3-5p mature miRNA
• Sequence: 21 - AGUGCCUGAGGGAGUAAGAG - 40
• Evidence: not_experimental

References

1. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


2. PubMed ID: 20733160
   Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
   "Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI,"
   "Blood (2010) 116:e118-e127


3. PubMed ID: 21911355
   miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
   "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
   "Nucleic Acids Res (2012) 40:37-52