Stem-loop hsa-mir-320b-2

Accession

MI0003839

Symbol

HGNC: MIR320B2

Description

Homo sapiens hsa-mir-320b-2 precursor miRNA

Literature search

146 open access papers mention hsa-mir-320b-2
(530 sentences)

Sequence

1043772 reads, 3661 reads per million, 137 experiments

gucucuuaggcuuucucuucccagauuucccaaaguugggAAAAGCUGGGUUGAGAGGGCAAaaggaaaaa
.((.(((..((((((((..(((((.(((((((....)))))))..)))))..))))))))..)))))....

Structure

---g  u   ag        uu     -a       a 
    uc cuu  gcuuucuc  cccag  uuuccca a
    || |||  ||||||||  |||||  |||||||  
    ag gaa  CGGGAGAG  GGGUC  AAAgggu g
aaaa  -   AA        UU     GA       u 

Annotation confidence Not enough data

Comments

This sequence was identified as a candidate by RAKE analysis [1], and later confirmed by Solexa sequencing [2,3]. The sequence was named mir-1242 in [2].

Genome context

chr1: 224257040-224257110 [-]

Mature hsa-miR-320b

• Accession: MIMAT0005792
• Description: Homo sapiens hsa-miR-320b mature miRNA
• Sequence: 41 - AAAAGCUGGGUUGAGAGGGCAA - 62
• Evidence: experimental ; RAKE [1], Illumina [2-3]

References

1. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


2. PubMed ID: 18285502
   Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
   "Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA"
   "Genome Res (2008) 18:610-621


3. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415