Stem-loop mmu-mir-505

Accession

MI0004706

Symbol

MGI: Mir505

Description

Mus musculus mmu-mir-505 precursor miRNA mir-505

Gene
family

RF00781; mir-505

Literature search

14 open access papers mention mmu-mir-505
(86 sentences)

Sequence

3982 reads, 13 reads per million, 94 experiments

aaauugaugcacccaguggGGGAGCCAGGAAGUAUUGAUGUUucugccagguuagCGUCAACACUUGCUGGUUUUCUcucuggaguauca
....((((((..((((.(((((((((((.((((.((((((((.((....))..)))))))).)))).))))))))))).)))).))))))

Structure

aaau      ac    u           G    A        -u  g 
    ugaugc  ccag ggGGGAGCCAG AAGU UUGAUGUU  cu c
    ||||||  |||| ||||||||||| |||| ||||||||  ||  
    acuaug  gguc cUCUUUUGGUC UUCA AACUGCga  gg c
----      -a    u           G    C        uu  a 

Annotation confidence Low

Genome context

chrX: 60394403-60394492 [-]

Mature mmu-miR-505-5p

• Accession: MIMAT0017259
• Description: Mus musculus mmu-miR-505-5p mature miRNA
• Sequence: 20 - GGGAGCCAGGAAGUAUUGAUGUU - 42
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-505-3p

• Accession: MIMAT0003513
• Description: Mus musculus mmu-miR-505-3p mature miRNA
• Sequence: 56 - CGUCAACACUUGCUGGUUUUCU - 77
• Evidence: experimental ; MPSS [1], Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771