Stem-loop mmu-mir-742

Accession

MI0005206

Symbol

MGI: Mir742

Description

Mus musculus mmu-mir-742 precursor miRNA

Literature search

3 open access papers mention mmu-mir-742
(5 sentences)

Sequence

591 reads, 486 reads per million, 25 experiments

ugcucUACUCACAUGGUUGCUAAUCAcgugaaguguagguGAAAGCCACCAUGCUGGGUAAAgua
((((.((((((((((((.(((..((((.((.....)).)))).))).)))))).)))))).))))

Structure

    c      -      U   AA    g  a 
ugcu UACUCA CAUGGU GCU  UCAc ug a
|||| |||||| |||||| |||  |||| || g
augA AUGGGU GUACCA CGA  AGug au u
    A      C      C   -A    g  g 

Annotation confidence High

Genome context

chrX: 66780373-66780437 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-742

Mature mmu-miR-742-5p

• Accession: MIMAT0004838
• Description: Mus musculus mmu-miR-742-5p mature miRNA
• Sequence: 6 - UACUCACAUGGUUGCUAAUCA - 26
• Evidence: experimental ; cloned [2], Illumina [4-5]

Mature mmu-miR-742-3p

• Accession: MIMAT0004237
• Description: Mus musculus mmu-miR-742-3p mature miRNA
• Sequence: 41 - GAAAGCCACCAUGCUGGGUAAA - 62
• Evidence: experimental ; cloned [1-2], 454 [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


5. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102