Accession
MI0005698
Description
Chlamydomonas reinhardtii
cre-MIR905 precursor miRNA
Sequence
172965
reads,
13514.0
reads per million, 50 experiments
ugccgggcuggggccgggcgggcugugaucgaccuggaggucccuggauauggcaccuucgagguuguggucacacacucaguccggggaccucggcccaguugcUGGUGCUAUGCUCUGACUACCcgacaagcaagcuuggggccgccccccacauugguccugcggUAGUCAGAACAGAGCACUAGCgacugggccgagguaacccgcacugagugcgugaccacaaccucgaaggugccauauccagggaccuccaggucgaucacagcccgcccggccccagcgcggca
(((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((.((((.(((((((((((((((((((((((.((.((((((((((..(..(.(((...(((((.....)))))..))).)..)..)))))))))).)).)))))))))))))))))))))))..)))).)))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))
(((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((.((((.(((((((((((((((((((((((.((.((((((((((..(..(.(((...(((((.....)))))..))).)..)..)))))))))).)).)))))))))))))))))))))))..)))).)))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))
Structure
g a c -g A C cg ca g gcu c
ugccg gcuggggccgggcgggcugugaucgaccuggaggucccuggauauggcaccuucgagguuguggucac cacucagu cggg accucggcccaguugcUGGUGCU UG UCUGACUACC a a caa ugggg c
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| || |||||||||| | | ||| ||||| g
acggc cgaccccggcccgcccgacacuagcuggaccuccagggaccuauaccguggaagcuccaacaccagug gugaguca gccc uggagccgggucagCGAUCACGA AC AGACUGAUgg u u guu acccc c
g c c aa G A cg cc g -ac c
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Molner et al. and Zhao et al agree that the predominant product from this hairpin precursor is from the 3' arm [1,2]. The product shown here is as described in [2], offset slightly from that described in [1]. Molner et al also identify a number of further offset and overlapping minor products, not shown here [2].
Genome context
ref|NC_057005.1|: 9207626-9207918 [+]
Database links
Mature cre-miR905-5p
| Accession | MIMAT0004964 |
| Description | Chlamydomonas reinhardtii cre-miR905-5p mature miRNA |
| Sequence | 106 - UGGUGCUAUGCUCUGACUACC - 126 |
| Evidence |
experimental
cloned [2] |
Mature cre-miR905-3p
| Accession | MIMAT0004386 |
| Description | Chlamydomonas reinhardtii cre-miR905-3p mature miRNA |
| Sequence | 169 - UAGUCAGAACAGAGCACUAGC - 189 |
| Evidence |
experimental
cloned [1-2] |
References
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