Accession
MI0005701
Description
Chlamydomonas reinhardtii
cre-MIR908 precursor miRNA
Sequence
37755
reads,
2274.0
reads per million, 51 experiments
guggguuuUGAGAAGAUGCGGUCCGUUGGCuauaauguugacagaccacccgcucccuuacugacgcaguugACGCGUUUGAUAGCAGGAUCauaguacgggaccaguuccccuaccaacuggucccguaaccacuaugaUCCUGCUAUCAAAGGCGUCAacuacgucaauaaggcagcggguggucaauauacauuauugccAACGGACCGGUUCUCCUCAAAugucac
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.((((((((((((((((((((((((((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).))))))))))))..))).))))))..))))
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.((((((((((((((((((((((((((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).))))))))))))..))).))))))..))))
Structure
gu A UG u ugaca c c c G ---- ccc
gugg uuUGAG AGA CGGUCCGUUGGC auaaugu gaccacccgcu ccuua ugacg aguugACGC UUUGAUAGCAGGAUCauagu acgggaccaguu c
|||| |||||| ||| |||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||
cacu AAACUC UCU GCCAGGCAAccg uauuaca cuggugggcga ggaau acugc ucaACUGCG AAACUAUCGUCCUaguauca ugcccuggucaa u
gu C UG u uauaa c a a G ccaa cca
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Zhao et al. identify a mature miRNA product from the 5' arm of the hairpin precursor, and named it miR908 [1]. Molner et al. identify 3 mature products, and suggest that an alternative 5' product is the predominant one, named cre-miR908.1 here [2]. The Zhao et al. product is renamed miR908.2 here.
Genome context
ref|NW_025061548.1|: 13754-13983 [+]
Database links
Mature cre-miR908.1-5p
| Accession | MIMAT0004965 |
| Description | Chlamydomonas reinhardtii cre-miR908.1-5p mature miRNA |
| Sequence | 9 - UGAGAAGAUGCGGUCCGUUGGC - 30 |
| Evidence |
experimental
cloned [2] |
Mature cre-miR908.2-5p
| Accession | MIMAT0004390 |
| Description | Chlamydomonas reinhardtii cre-miR908.2-5p mature miRNA |
| Sequence | 73 - ACGCGUUUGAUAGCAGGAUC - 92 |
| Evidence |
experimental
cloned [1-2] |
Mature cre-miR908.1-3p
| Accession | MIMAT0004966 |
| Description | Chlamydomonas reinhardtii cre-miR908.1-3p mature miRNA |
| Sequence | 204 - AACGGACCGGUUCUCCUCAAA - 224 |
| Evidence |
experimental
cloned [2] |
Mature cre-miR908.2-3p
| Accession | MIMAT0061195 |
| Description | Chlamydomonas reinhardtii cre-miR908.2-3p mature miRNA |
| Sequence | 141 - UCCUGCUAUCAAAGGCGUCA - 160 |
| Evidence |
experimental
cloned [1-2] |
References
|
