Stem-loop cre-MIR908

Accession

MI0005701

Description

Chlamydomonas reinhardtii cre-MIR908 precursor miRNA

Sequence

guggguuuUGAGAAGAUGCGGUCCGUUGGCuauaauguugacagaccacccgcucccuuacugacgcaguUGACGCGUUUGAUAGCAGGAUCauaguacgggaccaguuccccuaccaacuggucccguaaccacuaugauccugcuaucaaaggcgucaACUACGUCAAUAAGGCAGCggguggucaauauacauuauugccaacggaccgguucuccucaaaugucac
((((..((((((.(((..((((((((((((.(((((((.....(((((((((((.(((((.(((((.(((((((((.((((((((((((((((((((((((((((((((........))))))))))))....)))))))))))))))))))).))))))))).))))).))))).))))))))))).....))))))).))))))))))))..))).))))))..))))

Structure

    gu      A   UG            u       ugaca           c     c     c         G                    ----            ccc 
gugg  uuUGAG AGA  CGGUCCGUUGGC auaaugu     gaccacccgcu ccuua ugacg aguUGACGC UUUGAUAGCAGGAUCauagu    acgggaccaguu   c
||||  |||||| |||  |||||||||||| |||||||     ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||    ||||||||||||    
cacu  aaacuc ucu  gccaggcaaccg uauuaca     cuggugggCGA GGAAU ACUGC UCAacugcg aaacuaucguccuaguauca    ugcccuggucaa   u
    gu      c   ug            u       uauaa           C     A     A         g                    ccaa            cca 

Annotation confidence Not enough data

Comments

Zhao et al. identify a mature miRNA product from the 5' arm of the hairpin precursor, and named it miR908 [1]. Molner et al. identify 3 mature products, and suggest that an alternative 5' product is the predominant one, named cre-miR908.1 here [2]. The Zhao et al. product is renamed miR908.2 here.

Genome context

scaffold_213: 20092-20321 [+]

Mature cre-miR908.1

• Accession: MIMAT0004965
• Description: Chlamydomonas reinhardtii cre-miR908.1 mature miRNA
• Sequence: 9 - UGAGAAGAUGCGGUCCGUUGGC - 30
• Evidence: experimental ; cloned [2]

Mature cre-miR908.2

• Accession: MIMAT0004390
• Description: Chlamydomonas reinhardtii cre-miR908.2 mature miRNA
• Sequence: 71 - UGACGCGUUUGAUAGCAGGAUC - 92
• Evidence: experimental ; cloned [1-2]

Mature cre-miR908.3

• Accession: MIMAT0004966
• Description: Chlamydomonas reinhardtii cre-miR908.3 mature miRNA
• Sequence: 161 - ACUACGUCAAUAAGGCAGC - 179
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203


2. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129