Stem-loop cre-MIR910

Accession

MI0005703

Description

Chlamydomonas reinhardtii cre-MIR910 precursor miRNA

Literature search

1 open access papers mention cre-MIR910
(36 sentences)

Sequence

215904 reads, 14339.0 reads per million, 51 experiments

ccgcugcagccggucaggugcacccggaggugccggagcgguugggguugcggggcccgcagguagcugcCGUUGAGCCCGACGCUGCUGCcgccgcgccggugcugcugcgcggcagcaccugaccggcugcAGCAGCGUCGGGCUCGACCGCagccaccugcgggucccgcagccccagcagcuaccgacugcaccugaccggcugcaccugaccggcugcaggg
((.(((((((((((((((((((.((((((((((((((((.((((((((((((((((((((((((.(((((.((((((((((((((((((((.((((..(.(((((((((....))))))))).)..)))).)))))))))))))))))))).))))).)))))))))))))))))))))))).))).)))...))))))..)))).)))))))))))))))))))))

Structure

  g                   c    --      ---   -   g                        a     C                    c    cg c         g 
cc cugcagccggucaggugca ccgg  aggugc   cgg agc guugggguugcggggcccgcaggu gcugc GUUGAGCCCGACGCUGCUGC gccg  c ggugcugcu c
|| ||||||||||||||||||| ||||  ||||||   ||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||  | |||||||||  
gg gacgucggccaguccacgu ggcc  uccacg   gcc ucg cgaccccgacgcccugggcgucca cgaCG CAGCUCGGGCUGCGACGAcg cggc  g ccacgacgg g
  -                   c    ag      uca   a   a                        c     C                    u    ca u         c 

Annotation confidence High

Comments

Molner et al. confirm that the mature miRNA product identified by Zhao et al. and shown here is the predominant one [2]. They also identify 2 further minor products from the 3' arm, not shown here.

Genome context

ref|NC_057017.1|: 3218712-3218938 [-]

Mature cre-miR910-5p

• Accession: MIMAT0060760
• Description: Chlamydomonas reinhardtii cre-miR910-5p mature miRNA
• Sequence: 71 - CGUUGAGCCCGACGCUGCUGC - 91
• Evidence: experimental ; unknown

Mature cre-miR910-3p

• Accession: MIMAT0004393
• Description: Chlamydomonas reinhardtii cre-miR910-3p mature miRNA
• Sequence: 134 - AGCAGCGUCGGGCUCGACCGC - 154
• Evidence: experimental ; cloned [1-2]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203


2. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129