Stem-loop cre-MIR913

Accession

MI0005706

Description

Chlamydomonas reinhardtii cre-MIR913 precursor miRNA

Sequence

62100 reads, 3210.0 reads per million, 51 experiments

guaucugugucgcucaugcaagggacagccaacgaauucccucgccacguuuugggggcuugcacacuugcgaguccguggCCGUGUUUCCAAGGAUGUAUAcaagcgaagucgagacuuugguauuacauacucccacuucgcuuuuaUACAUUCUUGGAGACACGGCCacggacucgcaggugugcaagcccccgaaacgucgccagggaauucuuuggcugucccuugcaugagcgacacagauac
((((((((((((((((((((((((((((((((.(((((((((.((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((.(((....((......))..)))..))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))).)).))))))))).))))))))))))))))))))))))))))))))

Structure

                                c         c  c                                                        c         -c   acuu  gu 
guaucugugucgcucaugcaagggacagccaa gaauucccu gc acguuuugggggcuugcacacuugcgaguccguggCCGUGUUUCCAAGGAUGUAUA aagcgaagu  gag    ug  a
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||    ||   
cauagacacagcgaguacguucccugucgguu cuuaaggga cg ugcaaagcccccgaacguguggacgcucaggcaCCGGCACAGAGGUUCUUACAUau uucgcuuca  cuc    ac  u
                                u         c  c                                                        u         cc   --au  au 

Annotation confidence Medium

Comments

Zhao et al. identified a mature miRNA product from the 3' arm of this hairpin precursor, and named it miR913 [1]. Molner et al. show that predominant product originates from the 5' arm [2]. The 3' product is renamed miR913* here. Molner et al. also identify a number of minor products from the same hairpin, not catalogued here.

Genome context

ref|NC_057008.1|: 1790622-1790870 [+]

Mature cre-miR913-5p

• Accession: MIMAT0004968
• Description: Chlamydomonas reinhardtii cre-miR913-5p mature miRNA
• Sequence: 82 - CCGUGUUUCCAAGGAUGUAUA - 102
• Evidence: experimental ; cloned [2]

Mature cre-miR913-3p

• Accession: MIMAT0004396
• Description: Chlamydomonas reinhardtii cre-miR913-3p mature miRNA
• Sequence: 150 - UACAUUCUUGGAGACACGGCC - 170
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17470535
   A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
   "Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y"
   "Genes Dev (2007) 21:1190-1203


2. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129