Stem-loop cre-MIR1142

Accession

MI0006203

Description

Chlamydomonas reinhardtii cre-MIR1142 precursor miRNA

Sequence

4806 reads, 228.0 reads per million, 47 experiments

cguggcaggggucAAGGUGUGGAUGCGGCAUGGGuggcuaaccccgcccaugcCCAGACCACGCUCCAGCCccugccccg
((.(((((((((...(((((((.((.(((((((((((......)))))))))))))..)))))))...))))))))).))

Structure

  u         cAA       -A  C           cu 
cg ggcaggggu   GGUGUGG  UG GGCAUGGGugg  a
|| |||||||||   |||||||  || |||||||||||   
gc ccguccCCG   UCGCACC  AC Ccguacccgcc  a
  c         ACC       AG  -           cc 

Annotation confidence Medium

Genome context

ref|NC_057006.1|: 1573673-1573752 [+]

Mature cre-miR1142-5p

• Accession: MIMAT0005376
• Description: Chlamydomonas reinhardtii cre-miR1142-5p mature miRNA
• Sequence: 14 - AAGGUGUGGAUGCGGCAUGGG - 34
• Evidence: experimental ; cloned [1]

Mature cre-miR1142-3p

• Accession: MIMAT0060766
• Description: Chlamydomonas reinhardtii cre-miR1142-3p mature miRNA
• Sequence: 54 - CCAGACCACGCUCCAGCC - 71
• Evidence: experimental ; unknown

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129