Stem-loop cre-MIR1144a

Accession

MI0006205

Description

Chlamydomonas reinhardtii cre-MIR1144a precursor miRNA

Sequence

cggcggcguuggacugcuggggugcagcaggcuUGGAACCGGGCACGCAGGAGguggguuuuguggcggcaggnagCAGGCAGCGCGGGGCUGCUGGuggugguggaggaggaugaaguucgccauucaaacaacccuuucugcaccgguccugugcugcccguugccugcaggagcaaaacacacccacuccguguccggcuccaagauugcugaaccccugucgcuggcugcugccg
((((((((((((.(.((.(((((.(((((..((((((.(((((((((.((..((((.(((((((..(.(((((.(((.((((((((((((((...((((.(((.(((((.(..((((........))))..)...)))))))))))))))))))))))))).))).))))).)..))))))).))))..)).))))))))).))))))..))))).))))).)).)))))).)))))))

Structure

       -     a u  u     g     gg      A         C  GA    g       gg g     n   A              GCU    g   u     --a ga    guu 
cggcggc guugg c gc ggggu cagca  cuUGGA CCGGGCACG AG  Ggug guuuugu  c gcagg agC GGCAGCGCGGGGCU   GGug ugg ggagg   g  ugaa   c
||||||| ||||| | || ||||| |||||  |||||| ||||||||| ||  |||| |||||||  | ||||| ||| ||||||||||||||   |||| ||| |||||   |  ||||    
gccgucg cgguc g ug cccca gucgu  gaaccu ggccugugc uc  ccac caaaacg  g cgucc uug ccgucguguccugg   ccac guc uuucc   c  acuu   g
       u     - c  u     a     ua      c         c  ac    a       ag a     g   c              ---    -   -     caa aa    acc 

Annotation confidence Not enough data

Comments

The predominant product from this hairpin precursor is named cre-miR1144a.1 here [1].

Genome context

Unknown

Mature cre-miR1144a.2

• Accession: MIMAT0005379
• Description: Chlamydomonas reinhardtii cre-miR1144a.2 mature miRNA
• Sequence: 34 - UGGAACCGGGCACGCAGGAG - 53
• Evidence: experimental ; cloned [1]

Mature cre-miR1144a.1

• Accession: MIMAT0005380
• Description: Chlamydomonas reinhardtii cre-miR1144a.1 mature miRNA
• Sequence: 77 - CAGGCAGCGCGGGGCUGCUGG - 97
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129