Stem-loop cre-MIR1145

Accession

MI0006206

Description

Chlamydomonas reinhardtii cre-MIR1145 precursor miRNA

Sequence

65304 reads, 3216.0 reads per million, 51 experiments

cccaacguggaagggcaugaccuccucccuucugcagaccuaggucagaaggaccaggaccugcugggccccaaggucaUGGUCGCAAUGCUGGUCAACGCCaccgagagggucaacaccacccagcagcucugggcggacaucaagcagaagacguccuccagcgggaggccgucuucugcuugauguccgcccacagcugcugauuggcguugacccugucgguggccuUGACCAGCAUCGCGGCAAUGACCuuggggcccagcagguccugguccuucugaccaaggucugcacaagggaggaggucaugaguccacguggg
((((.((((((....((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((((((.(((((.(((((((((((.((((((((.(((((((((.(((..((((((((.((((((((((((((((((((((((.(((((....))))).)))))))))))))))))))))))).))))))))..))).))))))))).)))))))).))))))))))).))))).)))))))))))))))))))))))))))))))))))))).))))))))).))))))))))))))))..))))))))))

Structure

    a      aggg                c         a                                      G     A           C        g         a   cc        c                        u     a 
ccca cgugga    caugaccuccucccuu ugcagaccu ggucagaaggaccaggaccugcugggccccaaggucaU GUCGC AUGCUGGUCAA GCCaccga agggucaac cca  cagcagcu ugggcggacaucaagcagaagacg ccucc g
|||| ||||||    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||| |||||  
gggu gcaccu    guacuggaggagggaa acgucugga ccagucuuccugguccuggacgacccgggguuCCAGUA CGGCG UACGACCAGUu cgguggcu ucccaguug ggu  gucgucga acccgccuguaguucgucuucugc ggagg c
    -      --ga                c         a                                      A     C           c        g         c   ua        c                        c     g 

Annotation confidence Medium

Comments

Molner et al. identified several expressed products from this hairpin locus -- the predominant 2 are shown [1].

Genome context

Unknown

Mature cre-miR1145-5p

• Accession: MIMAT0005381
• Description: Chlamydomonas reinhardtii cre-miR1145-5p mature miRNA
• Sequence: 80 - UGGUCGCAAUGCUGGUCAACGCC - 102
• Evidence: experimental ; cloned [1]

Mature cre-miR1145-3p

• Accession: MIMAT0005382
• Description: Chlamydomonas reinhardtii cre-miR1145-3p mature miRNA
• Sequence: 232 - UGACCAGCAUCGCGGCAAUGACC - 254
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129