Stem-loop cre-MIR1145

Accession

MI0006206

Description

Chlamydomonas reinhardtii cre-MIR1145 precursor miRNA

Sequence

cccaacguggaagggcaugaccuccucccuucugcagaccuaggucagaaggaccaggaccugcugggccccaaggucauggucgcaaugcuggucaacgccaccgagagggucaacaccacccagcagcucugggcggacaucaagcagaagacguccuccagcgggaggccgucuucugcuugauguccgcccacagcugcugauUGGCGUUGACCCUGUCGGUGGccuugaccagcaucgcggcaaugaccUUGGGGCCCAGCAGGUCCUGGuccuucugaccaaggucugcacaagggaggaggucaugaguccacguggg
((((.((((((....((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((((((.(((((.(((((((((((.((((((((.(((((((((.(((..((((((((.((((((((((((((((((((((((.(((((....))))).)))))))))))))))))))))))).))))))))..))).))))))))).)))))))).))))))))))).))))).)))))))))))))))))))))))))))))))))))))).))))))))).))))))))))))))))..))))))))))

Structure

    a      aggg                c         a                                      g     a           c        g         a   cc        c                        u     a 
ccca cgugga    caugaccuccucccuu ugcagaccu ggucagaaggaccaggaccugcugggccccaaggucau gucgc augcuggucaa gccaccga agggucaac cca  cagcagcu ugggcggacaucaagcagaagacg ccucc g
|||| ||||||    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||| |||  |||||||| |||||||||||||||||||||||| |||||  
gggu gcaccu    guacuggaggagggaa acgucugga ccagucuuccuGGUCCUGGACGACCCGGGGUUccagua cggcg uacgaccaguu cGGUGGCU UCCCAGUUG GGU  gucgucga acccgccuguaguucgucuucugc ggagg c
    -      --ga                c         a                                      a     c           c        G         C   ua        c                        c     g 

Annotation confidence Not enough data

Comments

Molner et al. identified several expressed products from this hairpin locus -- the predominant 2 are shown [1].

Genome context

Unknown

Mature cre-miR1145.2

• Accession: MIMAT0005381
• Description: Chlamydomonas reinhardtii cre-miR1145.2 mature miRNA
• Sequence: 208 - UGGCGUUGACCCUGUCGGUGG - 228
• Evidence: experimental ; cloned [1]

Mature cre-miR1145.1

• Accession: MIMAT0005382
• Description: Chlamydomonas reinhardtii cre-miR1145.1 mature miRNA
• Sequence: 255 - UUGGGGCCCAGCAGGUCCUGG - 275
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129