Stem-loop cre-MIR1149

Accession

MI0006210

Description

Chlamydomonas reinhardtii cre-MIR1149 precursor miRNA

Sequence

37965 reads, 1048.0 reads per million, 51 experiments

cgaccgccucgggCCCGCUAUGUCGGACAACACCgacccccagcccgccaacaaggagauggcguuggcgggcuggggucggUGUUGUCUGACAUGGAGGGUCccaggcagucg
((((.((((.((((((.(((((((((((((((((((((((.(((((((((((...........)))))))))))))))))))))))))))))))))).)))))).)))).))))

Structure

    c    c      G                       c           aagg 
cgac gccu gggCCC CUAUGUCGGACAACACCgacccc agcccgccaac    a
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||    g
gcug cgga cCUGGG GGUACAGUCUGUUGUggcugggg ucgggcgguug    a
    a    c      A                       -           cggu 

Annotation confidence Medium

Genome context

ref|NC_057004.1|: 7190635-7190748 [+]

Mature cre-miR1149-5p

• Accession: MIMAT0005388
• Description: Chlamydomonas reinhardtii cre-miR1149-5p mature miRNA
• Sequence: 14 - CCCGCUAUGUCGGACAACACC - 34
• Evidence: experimental ; cloned [1]

Mature cre-miR1149-3p

• Accession: MIMAT0005389
• Description: Chlamydomonas reinhardtii cre-miR1149-3p mature miRNA
• Sequence: 83 - UGUUGUCUGACAUGGAGGGUC - 103
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129