Stem-loop cre-MIR1150

Accession

MI0006211

Description

Chlamydomonas reinhardtii cre-MIR1150 precursor miRNA

Sequence

ggacgcgcagcggagcagauccccgucauaccccgcuuggugcagcgcgucaauaucccucuuggcgagcuucgcaaauagagucggccccaguuuccgcugcagcugggcuucgugcuuccagcuuccugcacggcucgccguccgagcgccuugcuugccgcccgauacgcaguucggauucguauacgcauaucgaacucaauccgagucgcguaucaucggguggcaaggaaggcgcuggaagccucugacagcgagccaugcaggaagcugaaagccugaaagcccaccUGCAGCGGCGACUGGGGCCGAcccuguuugcaaagcUCGCCGAGAGGGACAUUGAUGCGCUGCaccaagcgggguaugacggggauacgcuccgcuucgcgucc
(((((((.((((((((..((((((((((((((((((((((((((((((((((((.(((((((((((((((((.((((((((.(((((((((((((.(((((((((.(((((((((.((((.((((((((((((.(((((((.((((.((((((((.(((((((((((((((((.((((((((((((((....))).))).....)))))))).)))))...)))))))))))).)))))))).)........))).))))))).)))))))))))).)))).)).))))))).))))))))).))))))))))))).)))))))).))))))))))))))))).))))))))))))))))))))))))))))))))))))..)))))))).)))))))

Structure

       c        ag                                    a                 c        a             u         c       -  u    c            c       c   -------- g        g            ---     a        -----   -   a 
ggacgcg agcggagc  auccccgucauaccccgcuuggugcagcgcgucaau ucccucuuggcgagcuu gcaaauag gucggccccaguu ccgcugcag ugggcuu cg gcuu cagcuuccugca ggcucgc guc        c agcgccuu cuugccgcccga   uacgc guucggau     ucg uau c
||||||| ||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||| || |||| |||||||||||| ||||||| |||        | |||||||| ||||||||||||   ||||| ||||||||     ||| |||  
ccugcgc ucgccucg  uaggggcaguauggggcgaaccaCGUCGCGUAGUUA AGGGAGAGCCGCUcgaa cguuuguc cAGCCGGGGUCAG GGCGACGUc acccgaa gu cgaa gucgaaggacgu ccgagcg cag        g ucgcggaa gaacggugggcu   augcg ugagccua     agc aua g
       u        ca                                    C                 a        c             C         c       a  c    a            a       a   ucuccgaa g        g            acu     c        acuca   u   c 

Annotation confidence Not enough data

Comments

Molner et al. identified a number of offset and overlapping mature miRNA products frmo this hairpin precursor [1]. The predominant ones are named and shown here.

Genome context

scaffold_10: 1711645-1712042 [+]

Mature cre-miR1150.3

• Accession: MIMAT0005390
• Description: Chlamydomonas reinhardtii cre-miR1150.3 mature miRNA
• Sequence: 295 - UGCAGCGGCGACUGGGGCCGA - 315
• Evidence: experimental ; cloned [1]

Mature cre-miR1150.2

• Accession: MIMAT0005391
• Description: Chlamydomonas reinhardtii cre-miR1150.2 mature miRNA
• Sequence: 331 - UCGCCGAGAGGGACAUUGAU - 350
• Evidence: experimental ; cloned [1]

Mature cre-miR1150.1

• Accession: MIMAT0005392
• Description: Chlamydomonas reinhardtii cre-miR1150.1 mature miRNA
• Sequence: 337 - AGAGGGACAUUGAUGCGCUGC - 357
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129