miRBase entry: cre-MIR1156

Stem-loop cre-MIR1156


Accession
MI0006218
Description
Chlamydomonas reinhardtii cre-MIR1156 precursor miRNA


Sequence

192281 reads, 7408.0 reads per million, 50 experiments
ucugaucugccugaagcuccaguugaaaccuggcaaggucgugugcccucuccaccgacaugcgaggguccaccgccguguggcacaggcuaccaUGGUAGCCAGUCUGCGCACCugcagccagcagcugaauucaucagcugucggcugcaggUGCGCAGACUGGCUACCUUCgaagccugggccucacggcgguggacccucgcauguccgugaagggggcucaugacccuacccaguuucagcuggagcuucaggcacaucaga
((((((.((((((((((((((((((((((.(((...(((((((.(((((((.(((.((((((((((((((((((((((((.(((.((((((.(...((((((((((((((((((((((((((.((((((((.....)))))))).))))))))))))))))))))))))))...).)))))).))).)))))))))))))))))))))))).))).))))))).)))))))....))))))))))))))))))))))))).))))))

Structure
      c                      c   -caa       u       c   c                        u   a      a caU                          a        a 
ucugau ugccugaagcuccaguugaaac ugg    ggucgug gcccucu cac gacaugcgaggguccaccgccgug ggc caggcu c   GGUAGCCAGUCUGCGCACCugcagcc gcagcuga u
|||||| |||||||||||||||||||||| |||    ||||||| ||||||| ||| |||||||||||||||||||||||| ||| |||||| |   |||||||||||||||||||||||||| |||||||| u
agacua acggacuucgaggucgacuuug acc    ccaguac cggggga gug cuguacgcucccagguggcggcac ccg guccga g   CCAUCGGUCAGACGCGUggacgucgg ugucgacu c
      c                      -   cauc       u       a   c                        u   g      a CUU                          c        a 


Annotation confidence Medium
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Genome context
ref|NC_057010.1|: 5707631-5707897 [+]

Database links

Mature cre-miR1156-5p

Accession MIMAT0005405
Description Chlamydomonas reinhardtii cre-miR1156-5p mature miRNA
Sequence 96 - UGGUAGCCAGUCUGCGCACC - 115
Evidence experimental
cloned [1]

Mature cre-miR1156-3p

Accession MIMAT0005406
Description Chlamydomonas reinhardtii cre-miR1156-3p mature miRNA
Sequence 155 - UGCGCAGACUGGCUACCUUC - 174
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17538623
    miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
    "Nature (2007) 447:1126-1129