Stem-loop cre-MIR1157

Accession

MI0006219

Description

Chlamydomonas reinhardtii cre-MIR1157 precursor miRNA

Literature search

2 open access papers mention cre-MIR1157
(2 sentences)

Sequence

180242 reads, 9112.0 reads per million, 51 experiments

uccugggcgcaguguuccagcugcaguacACCUGGUCCCGCUAUUUGAAUcucgcugaucggcaccaugggggugguggugaucagcgcuaUUCAGGUAGCGGGACCAGGUGuacugcagccggaacacugccagga
(((((...((((((((((.(((((((((((((((((((((((((((((((..(((((((((.((((((....)))))).)))))))))..))))))))))))))))))))))))))))))).)))))))))))))))

Structure

     ggc          a                               cu         g      g 
uccug   gcaguguucc gcugcaguacACCUGGUCCCGCUAUUUGAAU  cgcugaucg caccau g
|||||   |||||||||| |||||||||||||||||||||||||||||||  ||||||||| ||||||  
aggac   cgucacaagg cgacgucauGUGGACCAGGGCGAUGGACUUa  gcgacuagu guggug g
     ---          c                               uc         g      g 

Annotation confidence High

Genome context

ref|NC_057015.1|: 6402203-6402339 [-]

Mature cre-miR1157-5p

• Accession: MIMAT0005407
• Description: Chlamydomonas reinhardtii cre-miR1157-5p mature miRNA
• Sequence: 30 - ACCUGGUCCCGCUAUUUGAAU - 50
• Evidence: experimental ; cloned [1]

Mature cre-miR1157-3p

• Accession: MIMAT0005408
• Description: Chlamydomonas reinhardtii cre-miR1157-3p mature miRNA
• Sequence: 92 - UUCAGGUAGCGGGACCAGGUG - 112
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129