Stem-loop cre-MIR1158

Accession

MI0006220

Description

Chlamydomonas reinhardtii cre-MIR1158 precursor miRNA

Literature search

1 open access papers mention cre-MIR1158
(1 sentences)

Sequence

338375 reads, 9480.0 reads per million, 51 experiments

ggcgugcgcagcggcggccgccgcggcugaggaagccaugaucgaggcagcgcaggccacauuguaggccugccgcgcggcugugucaccucugaccaggugcgacgggaagccgggcugcuggggcugcugcugaccgccaguagccuccuccacgucuugugcuagcuccgcaagcaccgcguccucuauguccgUCAUGUCGGACUCGGCGUCGGagccagggcccucggcucgagcaucagucguccgcgcugcugcugagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgacaugacggauauugaggacgcggugcUUGCGGAGCUAGCAGAGGACUuggaggaggccacuggcggucagcagcagccccagcagcccagcuucccgucgcaccuggucagcggugcgacagccgcgcggcaagcauacaacguggccugcgcugccuccaucauggcuuccucagccgcggcggccgccggcuucgagagcc
(((...((.(((((((((((((((((((((((((((((((((.(((((((((((((((((.(((((.((.((((((((((((((..((((.((((((((((((((((((((((.((((((((((((((((((((((((((((((.((((((((((.(((((.(((((((((((((((((((((((((((.(((((((((((((((.....(((......))).(((((...))))).((((.(((.((....))))).)))).....................................................))))))))))))))).))))))))))))))))))))))))))).))))).)))))))))).)))))))))))))))))))))))))))))).)))))))))))))))))))))).))))..)))))))))))))).)).))))).))))))))))))))))).)))))))))))))))))))))))))))))).))).))...)))

Structure

   gug  c   -                              c                 a     g  c              gu    u                      c                              a          c     g                           u               ----------------------------------------------------------------------------------------GACUC   GU 
ggc   cg agc ggcggccgccgcggcugaggaagccaugau gaggcagcgcaggccac uugua gc ugccgcgcggcugu  cacc cugaccaggugcgacgggaagc gggcugcuggggcugcugcugaccgccagu gccuccucca gucuu ugcuagcuccgcaagcaccgcguccuc auguccgUCAUGUCG                                                                                             GGC  C
|||   || ||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||                                                                                             |||   
ccg   gc ucg ccgccggcggcgccgacuccuucgguacua cuccgucgcguccggug aacau cg acggcgcgccgaca  gugg gacugguccacgcugcccuucg cccgacgaccccgacgacgacuggcgguca cggaggaggu CAGGA ACGAUCGAGGCGUUcguggcgcaggag uauaggcaguacagc                                                                                             ccg  G
   aga  u   g                              c                 c     a  a              gc    c                      a                              c          U     G                           u               nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagucgucgucgcgccugcugacuacgagcucggcucccggga   aG 

Annotation confidence Low

Comments

Molner et al. cloned a number of minor products (cloned only once) from the loop end of this hairpin precursor (not shown) [1].

Genome context

Unknown

Mature cre-miR1158-5p

• Accession: MIMAT0060770
• Description: Chlamydomonas reinhardtii cre-miR1158-5p mature miRNA
• Sequence: 198 - UCAUGUCGGACUCGGCGUCGG - 218
• Evidence: experimental ; unknown

Mature cre-miR1158-3p

• Accession: MIMAT0005409
• Description: Chlamydomonas reinhardtii cre-miR1158-3p mature miRNA
• Sequence: 345 - UUGCGGAGCUAGCAGAGGACU - 365
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129