Stem-loop cre-MIR1160

Accession

MI0006221

Description

Chlamydomonas reinhardtii cre-MIR1160 precursor miRNA

Sequence

uuugcaugcucucgcccgcuacacaaacacgaaugcucaaacgcucccuucccgcacggguccuuccggcugcgccggucaagccugcccugcuuaaaaagggcaaaguucgggcUGACAAGGAAGCAGAGCGGAUccuccagagccucacagaccucaagaaggucggguucacaagcaaaugacgccugcuuaaccaggucguugccgccggaaaagucgucagcagcguggcagccugcuuagcaggcgucauuugcuugugaacccgaccuucuugaggucugugaggcucuggaggauccgcucugcuuccuugucagcccgaacuUUGCCCUUUUUAAGCAGGGCaggcuugaccggcgcagccggAAGGACCCGUGCGGGAAGGGAgcguuugagcauucguguuuguguagcgggcgagagcaugcaga
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((.(((((((((((.(.(((.....))).).)))))).....))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                                                                                                                                                                 u  c     -----      c c   a 
uuugcaugcucucgcccgcuacacaaacacgaaugcucaaacgcucccuucccgcacggguccuuccggcugcgccggucaagccugcccugcuuaaaaagggcaaaguucgggcUGACAAGGAAGCAGAGCGGAUccuccagagccucacagaccucaagaaggucggguucacaagcaaaugacgccugcu aa caggu     cguugc g cgg a
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     |||||| | ||| a
agacguacgagagcgggcgauguguuugugcuuacgaguuugcgAGGGAAGGGCGUGCCCAGGAAggccgacgcggccaguucggaCGGGACGAAUUUUUCCCGUUucaagcccgacuguuccuucgucucgccuaggaggucucggagugucuggaguucuuccagcccaaguguucguuuacugcggacga uu guccg     gcgacg c gcu a
                                                                                                                                                                                                 -  c     acggu      a u   g 

Annotation confidence Not enough data

Genome context

scaffold_26: 727941-728377 [-]

Mature cre-miR1160.2

• Accession: MIMAT0005410
• Description: Chlamydomonas reinhardtii cre-miR1160.2 mature miRNA
• Sequence: 116 - UGACAAGGAAGCAGAGCGGAU - 136
• Evidence: experimental ; cloned [1]

Mature cre-miR1160.1

• Accession: MIMAT0005411
• Description: Chlamydomonas reinhardtii cre-miR1160.1 mature miRNA
• Sequence: 332 - UUGCCCUUUUUAAGCAGGGC - 351
• Evidence: experimental ; cloned [1]

Mature cre-miR1160.3

• Accession: MIMAT0005412
• Description: Chlamydomonas reinhardtii cre-miR1160.3 mature miRNA
• Sequence: 373 - AAGGACCCGUGCGGGAAGGGA - 393
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129