miRBase entry: cre-MIR1160

Stem-loop cre-MIR1160


Accession
MI0006221
Description
Chlamydomonas reinhardtii cre-MIR1160 precursor miRNA


Sequence

98465 reads, 4377.0 reads per million, 51 experiments
uuugcaugcucucgcccgcuacacaaacacgaaugcucaaacgcucccuucccgcacggguccuuccggcugcgccggucaagccugcccugcuuaaaaagggcaaaguucgggcUGACAAGGAAGCAGAGCGGAUccuccagagccucacagaccucaagaaggucggguucacaagcaaaugacgccugcuuaaccaggucguugccgccggaaaagucgucagcagcguggcagccugcuuagcaggcgucauuugcuugugaacccgaccuucuugaggucugugaggcucuggaggAUCCGCUCUGCUUCCUUGUCAgcccgaacuuugcccuuuuuaagcagggcaggcuugaccggcgcagccggaaggacccgugcgggaagggagcguuugagcauucguguuuguguagcgggcgagagcaugcaga
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((.(((((((((((.(.(((.....))).).)))))).....))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
                                                                                                                                                                                                 u  c     -----      c c   a 
uuugcaugcucucgcccgcuacacaaacacgaaugcucaaacgcucccuucccgcacggguccuuccggcugcgccggucaagccugcccugcuuaaaaagggcaaaguucgggcUGACAAGGAAGCAGAGCGGAUccuccagagccucacagaccucaagaaggucggguucacaagcaaaugacgccugcu aa caggu     cguugc g cgg a
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||     |||||| | ||| a
agacguacgagagcgggcgauguguuugugcuuacgaguuugcgagggaagggcgugcccaggaaggccgacgcggccaguucggacgggacgaauuuuucccguuucaagcccgACUGUUCCUUCGUCUCGCCUAggaggucucggagugucuggaguucuuccagcccaaguguucguuuacugcggacga uu guccg     gcgacg c gcu a
                                                                                                                                                                                                 -  c     acggu      a u   g 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
ref|NC_057009.1|: 5488626-5489062 [-]

Database links

Mature cre-miR1160-5p

Accession MIMAT0005410
Description Chlamydomonas reinhardtii cre-miR1160-5p mature miRNA
Sequence 116 - UGACAAGGAAGCAGAGCGGAU - 136
Evidence experimental
cloned [1]

Mature cre-miR1160-3p

Accession MIMAT0005411
Description Chlamydomonas reinhardtii cre-miR1160-3p mature miRNA
Sequence 302 - AUCCGCUCUGCUUCCUUGUCA - 322
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17538623
    miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
    "Nature (2007) 447:1126-1129