Stem-loop cre-MIR1162

Accession

MI0006223

Description

Chlamydomonas reinhardtii cre-MIR1162 precursor miRNA

Literature search

1 open access papers mention cre-MIR1162
(1 sentences)

Sequence

gcggggcccugacaccacugcggccgcCGGCCUAAAUUACUACAACACGccgcgccuggacccgagggaggaccccucgggacccgguacgucgUGUUGUAGUAGUUUAGCCCUGCggucgcgguggggucagguccuuccgc
((((((.((((((.(((((((((((((.((.((((((((((((((((((.((.(((.((.((((((((.....)))))))).)).))).)).)))))))))))))))))).)).))))))))))))).)))))).))..))))

Structure

    --  c      a             C  C                  c  c   u  a        a 
gcgg  gg ccugac ccacugcggccgc GG CUAAAUUACUACAACACG cg gcc gg cccgaggg g
||||  || |||||| ||||||||||||| || |||||||||||||||||| || ||| || |||||||| g
cgcc  cc ggacug gguggcgcuggCG CC GAUUUGAUGAUGUUGUgc gc ugg cc gggcuccc a
    uu  u      g             U  C                  u  a   c  a        c 

Annotation confidence Low

Genome context

scaffold_3: 167785-167927 [-]

Mature cre-miR1162-5p

• Accession: MIMAT0005415
• Description: Chlamydomonas reinhardtii cre-miR1162-5p mature miRNA
• Sequence: 28 - CGGCCUAAAUUACUACAACACG - 49
• Evidence: experimental ; cloned [1]

Mature cre-miR1162-3p

• Accession: MIMAT0005416
• Description: Chlamydomonas reinhardtii cre-miR1162-3p mature miRNA
• Sequence: 95 - UGUUGUAGUAGUUUAGCCCUGC - 116
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129