miRBase entry: cre-MIR1164

Stem-loop cre-MIR1164


Accession
MI0006225
Description
Chlamydomonas reinhardtii cre-MIR1164 precursor miRNA


Sequence

84759 reads, 2661.0 reads per million, 51 experiments
ggugcucuucuggugcaacaggccagugguuugaguggUGGUCGACGGCAAUUGCUUCAGUcuuacuugcuuggcuuacguacguacgccucaagcaaguaagacugaagcaauugcugccgaccACCGAUCAAACCACUGGCCUGuugcaccagcagagcacu
((((((((.(((((((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((.(((....))).)))..))))))))))))))))))))))))))).))))))))).))))))))))))))))))))))))).))))))))

Structure
        u                         g         A                           --   u   g 
ggugcucu cuggugcaacaggccagugguuuga uggUGGUCG CGGCAAUUGCUUCAGUcuuacuugcuu  ggc uac u
|||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||| |||  
ucacgaga gaccacguuGUCCGGUCACCAAACU GCCAccagc gucguuaacgaagucagaaugaacgaa  ccg aug a
        c                         A         c                           cu   c   c 


Annotation confidence Low
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Genome context
ref|NC_057020.1|: 3137543-3137706 [+]

Database links

Mature cre-miR1164-5p

Accession MIMAT0005419
Description Chlamydomonas reinhardtii cre-miR1164-5p mature miRNA
Sequence 39 - UGGUCGACGGCAAUUGCUUCAGU - 61
Evidence experimental
cloned [1]

Mature cre-miR1164-3p

Accession MIMAT0060771
Description Chlamydomonas reinhardtii cre-miR1164-3p mature miRNA
Sequence 126 - ACCGAUCAAACCACUGGCCUG - 146
Evidence experimental
unknown

References

  1. PubMed ID: 17538623
    miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
    "Nature (2007) 447:1126-1129