Stem-loop cre-MIR1168

Accession

MI0006228

Description

Chlamydomonas reinhardtii cre-MIR1168 precursor miRNA

Sequence

gcggcuuggucuuuccgcgguggccuccuccucaaucuuggccuugcgcgcuucgggcuuggccuggucuacacagcaggcaggguugggaagcucccuuacccugccugcugUGUGGACAAGGCCAAGUCCGAAGCACGGAAGGCGAAGAuugaggaggagcgugcagugcggguccaugggucgugccugc
(((((((((.(...(((((.(((((((((((((((((((.(((((.((.((((((((((((((((.((((((((((((((((((((.((((...))))..)))))))))))))))))))).)))))))))))))))).)).))))).))))))))))))))).)).)).)))))).)))..))))))......

Structure

------      --   u uuu     g  -  -               g     g  c                g                    -u    a 
      gcggcu  ugg c   ccgcg ug gc cuccuccucaaucuu gccuu cg gcuucgggcuuggccu gucuacacagcaggcagggu  ggga  
      ||||||  ||| |   ||||| || || ||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||  |||| g
      ugcugg  acc g   ggcgu ac ug gaggaggaguuAGAA CGGAA GC CGAAGCCUGAACCGGA CAGGUGUgucguccguccca  cccu  
cguccg      gu   u ---     g  g  c               G     G  A                A                    uu    c 

Annotation confidence Not enough data

Genome context

scaffold_40: 432487-432679 [-]

Mature cre-miR1168.1

• Accession: MIMAT0005424
• Description: Chlamydomonas reinhardtii cre-miR1168.1 mature miRNA
• Sequence: 114 - UGUGGACAAGGCCAAGUCCGA - 134
• Evidence: experimental ; cloned [1]

Mature cre-miR1168.2

• Accession: MIMAT0005425
• Description: Chlamydomonas reinhardtii cre-miR1168.2 mature miRNA
• Sequence: 135 - AGCACGGAAGGCGAAGA - 151
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129