Stem-loop cre-MIR1170

Accession

MI0006230

Description

Chlamydomonas reinhardtii cre-MIR1170 precursor miRNA

Sequence

uaugggcaauacuaaaacuggcaacuuggcgauggacaugucacaaugucaguucugccguguucggcugauugagccuggucucagaccucaaucagcucAAUCAGCCAAACACGGCAGAacuggcaUGUCCAUCGCCAAGUUGCCAGuuucaguacugcccaua
((((((((.((((.(((((((((((((((((((((((((((........(((((((((((((((.((((((((((((..((((...)))).......)))))))))))).)))))))))))))))))))))))))))))))))))))))))).)))).))))))))

Structure

        a    a                           cacaaugu               c            -----cu    u 
uaugggca uacu aaacuggcaacuuggcgauggacaugu        caguucugccguguu ggcugauugagc       gguc  
|||||||| |||| |||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||       |||| c
auacccgu auga uuuGACCGUUGAACCGCUACCUGUacg        gucaAGACGGCACAA CCGACUAAcucg       ccag  
        c    c                           --------               A            acuaacu    a 

Annotation confidence Not enough data

Genome context

scaffold_5: 4560-4725 [+]

Mature cre-miR1170.2

• Accession: MIMAT0005428
• Description: Chlamydomonas reinhardtii cre-miR1170.2 mature miRNA
• Sequence: 102 - AAUCAGCCAAACACGGCAGA - 121
• Evidence: experimental ; cloned [1]

Mature cre-miR1170.1

• Accession: MIMAT0005429
• Description: Chlamydomonas reinhardtii cre-miR1170.1 mature miRNA
• Sequence: 129 - UGUCCAUCGCCAAGUUGCCAG - 149
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129