Stem-loop cre-MIR1171

Accession

MI0006231

Description

Chlamydomonas reinhardtii cre-MIR1171 precursor miRNA

Sequence

gggaguggaguggagUGGAGUGGAGUGGAGUGGAGUGGgagugggagugggugcaagggcgugggugggugggugcggcgggcgcgcuugucgugacaccuugacucaucaccccgccuccaacgccuccaacgccucgcuacucccccugcaacccccuuccccacgcccccgucccuccgcuccc
((((((((((.(((.(((.(.((.((((.(.((((.(((((.((((((((.((...((((((.((.(((((...(.((((((.(.(...((((........))))....).))))))).)...))))))).)))))))))))))))).))....))).))))))))).)))))))))))))))))))

Structure

          u   g   A U  A    A U    U   ----  u        g  caa      g  u     ggu c      c c -cuu    uga 
gggaguggag gga UGG G GG GUGG G GGAG GGg    ag gggagugg ug   gggcgu gg gggug   g ggcggg g g    gucg   c
|||||||||| ||| ||| | || |||| | |||| |||    || |||||||| ||   |||||| || |||||   | |||||| | |    ||||    
cccucgccuc ccu gcc c cc cacc c cuuc ccc    uc cccucauc gc   uccgca cc uccgc   c ccgccc c c    cagu   a
          -   -   - -  g    - -    c   aacg  c        -  ---      a  -     aac u      - a uacu    ucc 

Annotation confidence Not enough data

Genome context

scaffold_51: 419396-419582 [-]

Mature cre-miR1171

• Accession: MIMAT0005430
• Description: Chlamydomonas reinhardtii cre-miR1171 mature miRNA
• Sequence: 16 - UGGAGUGGAGUGGAGUGGAGUGG - 38
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129