Stem-loop cre-MIR1173

Accession

MI0006232

Description

Chlamydomonas reinhardtii cre-MIR1173 precursor miRNA

Sequence

guuuggccugguguuuaauuugcuuccacacauuugcaaugccagcaaauugcgcaugccaaugcauuuauagguuauugcauacgcccuggauuggcagcgugagugaaagugugcugggcugcgugcuacuguagaugaguggguacuugcgaaauguauuggcggccauuguAUGGUUGCAAUAGAAAUCAUGcaggggauacugugaauuauauaccauguaccaugugcaauguuucagaugucccugcacuagcaggcauucagacaucccagcaucccagcgcuggcaggcaugccugaaacauugcacaugguacauaauucacaguauccccuucaugauuuccauuguaaccauacaauggcagccaauacauuucucaaguacccacucaucuguacagcagcacgcaccuucacucaugcugccaauccagggcguaugcuauaaccuauaaaugcuuuggcaugcacaauuugcuggcauuacaacuguguggaugcagauuaacuuguaaccacaaac
(((((...((((..(((((((((.((((((((.(((.(((((((((((((((.(((((((((.(((((((((((((((.((((((((((((((((((((((((((((((.........(((.((((((((.(((((((((((((((((((((.(((((((((((((.(((((((((((((((((((.(((((((((.((((((((((((((((((.......((((((((((((((((((((((((((((((((....)))))......))))))...((((.((.((....)).)).)))).))))))))))))))))))))))))))))))))))))))).))))))))).))))))))))))))))))).))))))))))))).)))))))))))))))))..)))).))))))))))))))))))))))))))))))))))))))))).))))))))))))))).))))))))).))))))))))))))).))).)))))))).)))))))))......)))))))))

Structure

     gcc    ----gu         u        u   c               c         u               u                              aagugugcu   c        a    --                 c             g                   A         c                  uauacca                     ----------------------------      ------     a 
guuug   uggu      uuaauuugc uccacaca uug aaugccagcaaauug gcaugccaa gcauuuauagguuau gcauacgcccuggauuggcagcgugaguga         ggg ugcgugcu cugu  agaugaguggguacuug gaaauguauuggc gccauuguAUGGUUGCAAU GAAAUCAUG aggggauacugugaauua       uguaccaugugcaauguuuca                            gauguc      ccugc c
|||||   ||||      ||||||||| |||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||         ||| |||||||| ||||  ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||       |||||||||||||||||||||                            ||||||      |||||  
caaac   acca      aauuagacg aggugugu aac uuacggucguuuaac cguacgguu cguaaauauccaaua cguaugcgggaccuaaccgucguacucacu         ucc acgcacga gaca  ucuacucacccaugaac cuuuacauaaccg cgguaacauaccaauguua cuuuaguac uccccuaugacacuuaau       acaugguacacguuacaaagu                            cuacag      ggacg u
     ---    auguuc         u        c   a               a         u               u                              ---------   -        c    ug                 u             a                   c         u                  -------                     ccguacggacggucgcgacccuacgacc      acuuac     a 

Annotation confidence Not enough data

Comments

Molner et al. cloned a number of additional minor products (cloned only once) from this hairpin precursor (not shown) [1].

Genome context

scaffold_6: 1969701-1970232 [+]

Mature cre-miR1173

• Accession: MIMAT0005431
• Description: Chlamydomonas reinhardtii cre-miR1173 mature miRNA
• Sequence: 176 - AUGGUUGCAAUAGAAAUCAUG - 196
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129