Stem-loop cre-MIR1172

Accession

MI0006233

Description

Chlamydomonas reinhardtii cre-MIR1172 precursor miRNA

Sequence

cagUAGGAUCGGAGACGCAGUGAAgcccccuugcugcugcgauucuuuccgacuuacaacgugcucguggcgagcacauuguagguguagAGGAUUGCAGCAGCAACGGGGCuccgcugaguguccgaaucuacug
(((((((.(((((.((.(((((.((((((.((((((((((((((((((.(.((((((((.(((((((...))))))).))))))))).)))))))))))))))))).)))))).))))).)).))))).)))))))

Structure

       A     G  G     A      c                  c g        c       u 
cagUAGG UCGGA AC CAGUG Agcccc uugcugcugcgauucuuu c acuuacaa gugcucg  
||||||| ||||| || ||||| |||||| |||||||||||||||||| | |||||||| ||||||| g
gucaucu agccu ug gucgc uCGGGG AACGACGACGUUAGGAga g uggauguu cacgagc  
       a     g  a     c      C                  u -        a       g 

Annotation confidence Not enough data

Genome context

scaffold_76: 233228-233363 [+]

Mature cre-miR1172.2

• Accession: MIMAT0005432
• Description: Chlamydomonas reinhardtii cre-miR1172.2 mature miRNA
• Sequence: 4 - UAGGAUCGGAGACGCAGUGAA - 24
• Evidence: experimental ; cloned [1]

Mature cre-miR1172.1

• Accession: MIMAT0005433
• Description: Chlamydomonas reinhardtii cre-miR1172.1 mature miRNA
• Sequence: 91 - AGGAUUGCAGCAGCAACGGGGC - 112
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129