Stem-loop cre-MIR1159

Accession

MI0006236

Description

Chlamydomonas reinhardtii cre-MIR1159 precursor miRNA

Sequence

69686 reads, 2351.0 reads per million, 51 experiments

cgucgacaaucgggcacuguggcaaacugcgacAAUGCCAAUGGAGACGGAUGagaccguguuauuccagcagccgcgacuccuggaauggucacgcggcugaggcacccuugcuggguaccccagccgaugccgauguuccagccgcagucacggcggcagccacagcacggccuCAUCCGUCUCCAUUGGCAUUguacaccgucugccacagugcccgauugccgccg
((.((.((((((((((((((((((.((.(.(((((((((((((((((((((((((.(((((((......((.((((.(((((((((((((((....((((((.((.((((.....)))).)).))))))..)))...)))))))..).)))).)))).))......))))))).)))))))))))))))))))))))).).).)).)))))))))))))))))).)).))

Structure

  u  a                  a  u c -                        a       auucca  a    c    - --       ---   cacg      a  c    u 
cg cg caaucgggcacuguggca ac g g acAAUGCCAAUGGAGACGGAUGag ccguguu      gc gccg gacu c  cuggaau   ggu    cggcug gg accc u
|| || |||||||||||||||||| || | | |||||||||||||||||||||||| |||||||      || |||| |||| |  |||||||   |||    |||||| || |||| g
gc gc guuagcccgugacaccgu ug c c ugUUACGGUUACCUCUGCCUACuc ggcacga      cg cggc cuga g  gaccuug   ccg    gccgac cc uggg c
  c  c                  c  c a a                        c       caccga  g    a    c cc       uag   --ua      c  a    u 

Annotation confidence High

Genome context

ref|NC_057017.1|: 1191553-1191778 [-]

Mature cre-miR1159-5p

• Accession: MIMAT0005436
• Description: Chlamydomonas reinhardtii cre-miR1159-5p mature miRNA
• Sequence: 34 - AAUGCCAAUGGAGACGGAUG - 53
• Evidence: experimental ; cloned [1]

Mature cre-miR1159-3p

• Accession: MIMAT0005437
• Description: Chlamydomonas reinhardtii cre-miR1159-3p mature miRNA
• Sequence: 177 - CAUCCGUCUCCAUUGGCAUU - 196
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129