Stem-loop mmu-mir-669d

Accession

MI0006281

Symbol

MGI: Mir669d

Description

Mus musculus mmu-mir-669d precursor miRNA

Literature search

10 open access papers mention mmu-mir-669d
(13 sentences)

Sequence

2462 reads, 100 reads per million, 90 experiments

cagcccgggauuuguguguugcuugcucuauauguguguauACUUGUGUGUGCAUGUAUAUGUguguauaugaauauacaUAUACAUACACACCCAUAUACacacgcaugcaugcacacac
............((((((((((.(((.......(((((((((..((.(((((.((((((((((((((......)))))))))))))).))))).)))))))))))))).))).))))))).

Structure

cagcccgggauu       -   u   ucuauau         CU  U     C              au 
            ugugugu ugc ugc       guguguauA  UG GUGUG AUGUAUAUGUgugu  a
            ||||||| ||| |||       |||||||||  || ||||| ||||||||||||||   
            acacacg acg acg       cacaCAUAU  AC CACAC UACAUAUacauaua  u
-----------c       u   u   -------         --  C     A              ag 

Annotation confidence High

Genome context

chr2: 10468343-10468463 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from mmu-mir-669d

Mature mmu-miR-669d-5p

• Accession: MIMAT0005833
• Description: Mus musculus mmu-miR-669d-5p mature miRNA
• Sequence: 42 - ACUUGUGUGUGCAUGUAUAUGU - 63
• Evidence: experimental ; Illumina [1]

Mature mmu-miR-669d-3p

• Accession: MIMAT0017324
• Description: Mus musculus mmu-miR-669d-3p mature miRNA
• Sequence: 81 - UAUACAUACACACCCAUAUAC - 101
• Evidence: experimental ; 454 [3], Illumina [4]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275


4. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102