Accession
MI0006963
Description
Oryza sativa
osa-MIR1423 precursor miRNA
Literature search
4 open access papers mention osa-MIR1423
(8 sentences)
(8 sentences)
Sequence
806
reads,
587
reads per million, 2 experiments
gcacaacacuaguauuugggAGGCAACUACACGUUGGGCGCUCGauccaggggugggaaaaucgggcgcccacguuuuccccacccccggaucgAGCGCCCAAGCGGUAGUUGUCucccaaauacuugugcugugc
(((((.(((.((((((((((((((((((((.(((((((((((((((((.((((((((.(((.((((...)).)).))).)))))))).))))))))))))).)))))))))))))))))))))))).))).)))))
(((((.(((.((((((((((((((((((((.(((((((((((((((((.((((((((.(((.((((...)).)).))).)))))))).))))))))))))).)))))))))))))))))))))))).))).)))))
Structure
a u A - a a u - c
gcaca cac aguauuugggAGGCAACUAC CGUU GGGCGCUCGaucc gggguggg aaa cg gg
||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||| ||| || || g
cgugu gug ucauaaacccuCUGUUGAUG GCGA CCCGCGAgcuagg ccccaccc uuu gc cc
c u - A c c u a c
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
Chr4: 19715117-19715252 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1423
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR1423-5p
| Accession | MIMAT0015244 |
| Description | Oryza sativa osa-miR1423-5p mature miRNA |
| Sequence | 21 - AGGCAACUACACGUUGGGCGCUCG - 44 |
| Evidence |
experimental
Illumina [3], 454 [4] |
| Database links |
|
Mature osa-miR1423-3p
| Accession | MIMAT0005957 |
| Description | Oryza sativa osa-miR1423-3p mature miRNA |
| Sequence | 95 - AGCGCCCAAGCGGUAGUUGUC - 115 |
| Evidence |
experimental
MPSS [1], Northern [1], cloned [2], Illumina [3] |
References
|
