Stem-loop cfa-mir-486

Accession

MI0008027

Description

Canis lupus familiaris cfa-mir-486 precursor miRNA

Literature search

10 open access papers mention cfa-mir-486
(18 sentences)

Sequence

19620826 reads, 34001.0 reads per million, 82 experiments

UCCUGUACUGAGCUGCCCCGAGcugagcgcagugaauggccuCGGGGCAGCUCAGUACAGGAUc
((((((((((((((((((((((....((.((.....))))))))))))))))))))))))))..

Structure

--                      cuga  g  g 
  UCCUGUACUGAGCUGCCCCGAG    gc ca u
  ||||||||||||||||||||||    || || g
  AGGACAUGACUCGACGGGGCuc    cg gu a
cU                      ----  -  a 

Annotation confidence High

Genome context

16: 25706837-25706900 [-]

Mature cfa-miR-486-5p

• Accession: MIMAT0011132
• Description: Canis lupus familiaris cfa-miR-486-5p mature miRNA
• Sequence: 1 - UCCUGUACUGAGCUGCCCCGAG - 22
• Evidence: experimental ; Illumina [1-2]

Mature cfa-miR-486-3p

• Accession: MIMAT0032036
• Description: Canis lupus familiaris cfa-miR-486-3p mature miRNA
• Sequence: 43 - CGGGGCAGCUCAGUACAGGAU - 63
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


2. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545