Stem-loop cfa-mir-339

Accession

MI0008115

Description

Canis lupus familiaris cfa-mir-339 precursor miRNA

Sequence

496112 reads, 743.0 reads per million, 82 experiments

UCCCUGUCCUCCAGGAGCUCACUuauaucuggccgUGAGCUCCUCGAGGCCAGAGCCC
...(((.((((.((((((((((............)))))))))).)))).))).....

Structure

--UCC   U    C          Uuaua 
     CUG CCUC AGGAGCUCAC     u
     ||| |||| ||||||||||      
     GAC GGAG UCCUCGAGUg     c
CCCGA   C    C          ccggu 

Annotation confidence High

Genome context

6: 15984276-15984333 [+]

Mature cfa-miR-339-5p

• Accession: MIMAT0011134
• Description: Canis lupus familiaris cfa-miR-339-5p mature miRNA
• Sequence: 1 - UCCCUGUCCUCCAGGAGCUCACU - 23
• Evidence: experimental ; Illumina [1-2]

Mature cfa-miR-339-3p

• Accession: MIMAT0051965
• Description: Canis lupus familiaris cfa-miR-339-3p mature miRNA
• Sequence: 36 - UGAGCUCCUCGAGGCCAGAGCCC - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


2. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545