Stem-loop cfa-mir-136

Accession

MI0008133

Description

Canis lupus familiaris cfa-mir-136 precursor miRNA

Literature search

3 open access papers mention cfa-mir-136
(4 sentences)

Sequence

261235 reads, 833.0 reads per million, 78 experiments

ACUCCAUUUGUUUUGAUGAUGGAuucuuacgcucCAUCAUCGUCUCAAAUGAGUCU
((((.(((((...((((((((((.........))))))))))...)))))))))..

Structure

--    C     UUU          uuc 
  ACUC AUUUG   UGAUGAUGGA   u
  |||| |||||   ||||||||||   u
  UGAG UAAAC   GCUACUACcu   a
UC    -     UCU          cgc 

Annotation confidence High

Genome context

8: 69390105-69390160 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-136

Mature cfa-miR-136-5p

• Accession: MIMAT0006714
• Description: Canis lupus familiaris cfa-miR-136-5p mature miRNA
• Sequence: 1 - ACUCCAUUUGUUUUGAUGAUGGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-136-3p

• Accession: MIMAT0051834
• Description: Canis lupus familiaris cfa-miR-136-3p mature miRNA
• Sequence: 35 - CAUCAUCGUCUCAAAUGAGUCU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415