Stem-loop aga-mir-87

Accession

MI0008308

Description

Anopheles gambiae aga-mir-87 precursor miRNA

Literature search

1 open access papers mention aga-mir-87
(2 sentences)

Sequence

2747 reads, 171.0 reads per million, 24 experiments

gauuucucucggcCCAGCCUGAAAUUUGCUAAACCUgauacguguucgaaaccaaGGUGAGCAAAUAUUCAGGUGUgucgacgagcggucacauucgucg
((((.((((((((...((((((((((((((..((((....((....))......)))).))))))).)))))))..))))).))).))))..........

Structure

----------    u   -     CCA       -       AA    --gaua  u 
          gauu cuc ucggc   GCCUGAA AUUUGCU  ACCU      cg g
          |||| ||| |||||   ||||||| |||||||  ||||      ||  
          cugg gag agcug   UGGACUU UAAACGA  UGGa      gc u
gcugcuuaca    c   c     -UG       A       -G    accaaa  u 

Annotation confidence Medium

Comments

This mature miRNA was cloned from Anopheles stepheni, and mapped to the A. gambiae genome [1].

Genome context

ref|NC_064600.1|: 288400-288499 [-]

Mature aga-miR-87-5p

• Accession: MIMAT0053032
• Description: Anopheles gambiae aga-miR-87-5p mature miRNA
• Sequence: 14 - CCAGCCUGAAAUUUGCUAAACCU - 36
• Evidence: not_experimental

Mature aga-miR-87-3p

• Accession: MIMAT0007858
• Description: Anopheles gambiae aga-miR-87-3p mature miRNA
• Sequence: 56 - GGUGAGCAAAUAUUCAGGUGU - 76
• Evidence: not_experimental

References

1. PubMed ID: 18500992
   Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
   Mead EA, Tu Z
   BMC Genomics (2008) 9:244