Stem-loop aga-mir-1890

Accession

MI0008311

Description

Anopheles gambiae aga-mir-1890 precursor miRNA

Literature search

4 open access papers mention aga-mir-1890
(8 sentences)

Sequence

4420 reads, 286.0 reads per million, 24 experiments

gucguguggacggccAGAGCUAAUUGGAGUAUUUCUUGaggaauauuuuugacaagcucaUGAAAUCUUUGAUUAGGUCUgguuauucguuacgac
((((((.(((.(((((((.((((((((((.(((((.((((................)))).))))))))))))))).))))))).)))..))))))

Structure

      -u   c       G          U     U    gaauauu 
gucgug  gga ggccAGA CUAAUUGGAG AUUUC UGag       u
||||||  ||| ||||||| |||||||||| ||||| ||||        
cagcau  cuu uuggUCU GAUUAGUUUC UAAAG acuc       u
      ug   a       G          -     U    gaacagu 

Annotation confidence High

Comments

This mature miRNA was cloned from Anopheles stepheni, and mapped to the A. gambiae genome [1].

Genome context

ref|NC_064602.1|: 20853697-20853792 [-]

Mature aga-miR-1890-5p

• Accession: MIMAT0053034
• Description: Anopheles gambiae aga-miR-1890-5p mature miRNA
• Sequence: 16 - AGAGCUAAUUGGAGUAUUUCUUG - 38
• Evidence: not_experimental

Mature aga-miR-1890-3p

• Accession: MIMAT0007861
• Description: Anopheles gambiae aga-miR-1890-3p mature miRNA
• Sequence: 61 - UGAAAUCUUUGAUUAGGUCU - 80
• Evidence: not_experimental

References

1. PubMed ID: 18500992
   Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi
   Mead EA, Tu Z
   BMC Genomics (2008) 9:244