Stem-loop bta-mir-29d

Accession

MI0009788

Description

Bos taurus bta-mir-29d precursor miRNA

Literature search

22 open access papers mention bta-mir-29d
(81 sentences)

Sequence

345 reads, 9 reads per million, 67 experiments

aucucuuacacaggcUGACCGAUUUCUCCUGGUGUUcagagucuguuuuugucUAGCACCAUUUGAAAUCGAUUAugauguaggggga
..((((((((((...(((.(((((((...(((((((.(((...........))))))))))...))))))).))))).))))))))..

Structure

au        -  ggc   C       UCC       c   gucu 
  cucuuaca ca   UGA CGAUUUC   UGGUGUU aga    g
  |||||||| ||   ||| |||||||   ||||||| |||    u
  ggggaugu gu   AUU GCUAAAG   ACCACGA Ucu    u
ag        a  ---   A       UUU       -   guuu 

Annotation confidence Medium

Genome context

chr16: 77816279-77816366 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-29d

Mature bta-miR-29d-3p

• Accession: MIMAT0009275
• Description: Bos taurus bta-miR-29d-3p mature miRNA
• Sequence: 54 - UAGCACCAUUUGAAAUCGAUUA - 75
• Evidence: experimental ; cloned [2], Illumina [3]

Mature bta-miR-29d-5p

• Accession: MIMAT0026919
• Description: Bos taurus bta-miR-29d-5p mature miRNA
• Sequence: 16 - UGACCGAUUUCUCCUGGUGUU - 36
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125


3. PubMed ID: 23100578
   Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
   "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
   "J Anim Sci (2013) 91:90-103